Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02530 ATGGATGTAATTTTTGAAGTGCAAAGAGGTAGACCATTCACAATTGAAGTAGGCTTCTTTGATACAATTTTAGAAATCAAAGAAAAAGTTCAAAAGTATCAAGGAATTCCAATCTCCAAACAAACCCTAATCTTCAATGGCCAAATTCTCCAAGACGACGGAGACATTTGGAAATGCGGAATTTTTCAAAACTCGCGCATTCACCTCATGGTTGCCTCAGATTCCGATCATCACAAACCGCCGGTTGAAGATACCAAATTTCACCTCAACATCAAAATGCCTTTATCCAAATCCCACATTCCCATCGAAATCGACAAAAATGACACCGTTTTAAAGTTGAAAGAGAAAATTCATGACATTGATCAAAATAATGTCCCATTGAACAAAGTCATGTTGCACTCAACCGGAACCGAATTGCACGACAATCAGTTGTTACGCGATTGTGAATTTTCGGAGAAAAATGAAATTGAGGTTAGTTTTAAGCCACCAGTGCCGACGGCCCCAACCGTGGTTAATGGTGGAGGTGGAGCCTCGAAGAAATTGAAGCTGATGGTTAAGAGTGGAACAAAGAAAATTCCTGTGGAGATGAATGCTTCGGATAATGTTGGAGAATTAAGGAAAGAGCTTCAAAAATTGAATCAAATGCTTCAATTTCATCTTCCACAAGATGGTTACTTTTTCATTTATAAGCAAAATGTTATGGATGATGATAAGTCATTTCGATGGCATCATGTTAGTCAAGGTGATACCATTGAAATCTTTAATGGTAGTGTCACTGGTGGATCATGA 789 0.3815 MDVIFEVQRGRPFTIEVGFFDTILEIKEKVQKYQGIPISKQTLIFNGQILQDDGDIWKCGIFQNSRIHLMVASDSDHHKPPVEDTKFHLNIKMPLSKSHIPIEIDKNDTVLKLKEKIHDIDQNNVPLNKVMLHSTGTELHDNQLLRDCEFSEKNEIEVSFKPPVPTAPTVVNGGGGASKKLKLMVKSGTKKIPVEMNASDNVGELRKELQKLNQMLQFHLPQDGYFFIYKQNVMDDDKSFRWHHVSQGDTIEIFNGSVTGGS 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02530 262 Gene3D - 86 161 - -
Trre6g02530 262 SMART ubq_7 87 161 IPR000626 GO:0005515
Trre6g02530 262 SMART ubq_7 1 72 IPR000626 GO:0005515
Trre6g02530 262 SMART ubq_7 181 256 IPR000626 GO:0005515
Trre6g02530 262 PANTHER UV EXCISION REPAIR PROTEIN RAD23 178 259 - -
Trre6g02530 262 Gene3D - 1 70 - -
Trre6g02530 262 Gene3D - 171 257 - -
Trre6g02530 262 ProSiteProfiles Ubiquitin domain profile. 87 161 IPR000626 GO:0005515
Trre6g02530 262 FunFam Ubiquitin-like superfamily protein 1 72 - -
Trre6g02530 262 Coils Coil 195 215 - -
Trre6g02530 262 SUPERFAMILY Ubiquitin-like 1 81 IPR029071 -
Trre6g02530 262 CDD Ubl_ubiquitin_like 89 158 - -
Trre6g02530 262 SUPERFAMILY Ubiquitin-like 173 254 IPR029071 -
Trre6g02530 262 ProSiteProfiles Ubiquitin domain profile. 181 260 IPR000626 GO:0005515
Trre6g02530 262 Pfam Ubiquitin family 89 162 IPR000626 GO:0005515
Trre6g02530 262 Pfam Ubiquitin family 185 252 IPR000626 GO:0005515
Trre6g02530 262 Pfam Ubiquitin family 6 72 IPR000626 GO:0005515
Trre6g02530 262 ProSiteProfiles Ubiquitin domain profile. 1 71 IPR000626 GO:0005515
Trre6g02530 262 SUPERFAMILY Ubiquitin-like 84 163 IPR029071 -
Trre6g02530 262 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Trre6g02530 262 CDD Ubl_ubiquitin_like 3 70 - -
Trre6g02530 262 PRINTS Ubiquitin signature 32 52 IPR019956 -
Trre6g02530 262 PRINTS Ubiquitin signature 11 31 IPR019956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02530 Trre-Chr6 22234518 22235306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02530 1 71 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 35.211 5.90e-07 45.8