Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02516 ATGAATGCTACGGATATCATTGGGGCTTTCTTTCCTGGTTTCACATCTAGTTGCATACATATCATGAGCCTTCACTCTTGGCCTTGTTTTTATCCATTTCTGGGGTGTGCCTCCCCATATCTTAAACAGCTTGTTTGCAAGCTGCATTTGATCCTCGAGTTGCAGCTCACCGCACAATCGTTGTGGCTCGTGCACCATCGTGCAGGTGACTTCGAGGAAGCAGTTGAAGAAGATGCTAAAACTGCTGTACAAGATGGAACTGTCCACCCTCTAACCAACTATGTCATCAGAGAATGCTAG 300 0.46 MNATDIIGAFFPGFTSSCIHIMSLHSWPCFYPFLGCASPYLKQLVCKLHLILELQLTAQSLWLVHHRAGDFEEAVEEDAKTAVQDGTVHPLTNYVIREC 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02516 99 Gene3D Exocyst complex component Exo70 40 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02516 Trre-Chr6 22129032 22130467 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02516 69 96 EXO70 exocyst subunit family AT5G03540 86.207 1.46e-09 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02516 K07195 - atr:18444439 54.299