LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre6g02508	ATGGAAGATTGTTCACAAAACTCAAAATGGAAGTATCATGTTTTCTTGAGTTTTAGGGGAGAAGACACGCGCTTAGGCTTCACCGATCACCTATATGCTGCCTTGGTGCGTAAGAGTATAATAACTTTCAGAGATGATGAAGAACTTGCAAGAGGTGAAGTAATCTCACAAAAACTCCTCCATGCAATTGAGGAATCTCTCTCAGCAGTTGTCATAATATCCAAAAACTATGCTACCTCAGCATGGTGTTTGGATGAGTTAGTCAAGATTCTCGAATCCAAACGTTTGTCAGGACAACAAGTGTTCCCAATCTTCTATGGCGTAGATCCCTCCGATGTAAGGAATCAAAGGGGAAGTTTTGCTGAAGCTTTTAGGAAACATGAACAAAAATTTACTGAAAGCAAAGAGAAGGTGCAAAGGTGGAGAGATGCATTGAGAGAGGTTGCCAACTTGTCAGGGTGGGATTCTAAGGATCAACATGAAACAAAACTCATCGAAGAAGTTGTTGTACAAGTATGGAAAAAACTGGAACTCAAATTCCCATCTTATTACGATGGACTGGTTGCAATTGATGCAAGATTGGAAGAATTATATTCAATTCTGAAGTTAGGATCGGAAGATATTTGTTTCATAGGAATATGGGGTATGGGTGGGATAGGTAAAACAACTCTTACTACAGCTCTTTTCAAAATAATCAAAAGCCAGTTTGATGTAAGTTGCTTCATTGCTAATGTCAGGGAGGTCTCTGGGGAAAGAAACCAAGGTCTTCTACAGTTACAAAATAAAATTCTTTCATATCTGAACATAAAAGGAATGGTAATTGAAACATTAAGCCAAGGAAAGGACAGCTTAAGAAACCTTTTATCCAACAAAAAGGTTCTTCTTGTCCTTGATGATGTAAGTTCTAAAACCCAACTTGAGAGTTTGGCTGGAAGCCATGAATGGTTCGGTCAAGGGAGTAGGATTATAGTTACGACTAGGGATAAGCACCTCTTGATATCGCACACTGTATTGTTTGAAATGTATGAGAGTAAAATCTTAAATAAAAGTGAATCCCTTAATCTTTTTTGTGAAAAAGCATTTAACGAAGACGCACCTAAAGAGGGCTATACGGAGTTGTCTAAAATTGTGGTCGAATATGCTCGAGGCCTCCCTTTGACTCTCGAAGTGTTGGGTTCTTTTCTTTGTGGAAGAAGTGTATCTGATTGGGAAGATGCTTTAATCAAAATTAAACAAGTTCCACATGATGATATCATAAACAAACTTAGAATAAGCTATGACATGTTAGAAGATGAACACAAGACCATATTTCTAGATATAGCCTGCTTTTTTAAGGGATGGTACAAACATAAAGTGGTACAAATATTGGAAAATTGCGGCCTTCATCCAACCGTTGGAATAAATGTTCTCATAGAAAAATTGTTAGTAACTTTCGATGGAAGAGTTATCTGGATGCATGATATGCTTGAAGAAATGGGTAAGACTATAGTTTTTCAAGAATCCCCTAATGATCCTGGTAGACGAAGCAGATTGTGGTCTCTAGAGGATATTGATAAAGTGCTGAGAAAAAATAAGGGAACTGAAATTGTGCAAGGTATAGTTTTGAAATCATCACCATATACACTGTATGAAGCATATTGGGACCCCGAGGCGTTCTCAAAGATGTGTAATCTTAGCTCACTCAAAGTGCTTGTATGGTGGGGGTATCCATTGAATGCTCTACCACTTGGAGTTCAACTAGACGAGCTTGTACATTTACAAATGATCAATAGTAAACTTAATCAGTTGTGGAATAGAAATGAGTATTTTGGAAAGCTGAAAGTAATTGATTTGAGTAATTCCAAAGATTTACGTCAAACTCCAAACATCTCTGGAATTCCAAATCTTGAAGAGCTGTATCTTAATGATTGTACAAAACTTGTTGAAGTTCACCAATCTATCCGACAACACAAAAAACTCATGATAGTTAGCTTGATGGGATGTGTAAATCTGAAAACCTTTCCAAGCGTCACGGCTCTCAACTTGATGAATTGCAAAAGTCTTCTATACCTTCCAAACAGCATTAGTAACCTGAAGTCTCTCAGAATTCTCAACATATCAGGATGTTCAAAAATTTGTACCCTGCCAAATGGTATAAATCAAAACAAGGCTTTGAAGGACATTGACTTGAGCAGAACTGCTATTAGAGAATTGGATCCATCCCTATTTCAGTTAGAAAATATCAAAAGATTATCATTCAGAGGATGTAGTGGAACAACATCCAATTTCAGCTGGGAGTTTCAGCTGCCTTTCGGCAAGAAGTTCAGGTTTTTCCCATCTCAAACAGGCTTAACATTGCCTCCTTTTGTATCAGCCCTTTCCTCATTAACTGAATTGGATTTAAGCTATTGTAATCTCAATGATAATTCAATTCCCCGTGATATTGATTGCTTATCATATTTAGAGAGACTAAACCTAAGTGGGAACAATTTTGTACGCCTTCCGAGTCATTACATTGCCAATCTTACAAAGCTTCGTTATCTTGAATTGGAAGATTGCTCACAGCTTCGATCTTTACCTATGCTTCCACCACATGTACGCTTGTATGCAACAGATTCAGATACAAAGGAAGCTAATGCATTAGATCCACAAAAGATATGGAAGGTGTTTGAATCAAGCGAAAAAGAATTCTTACAGGCATCTGTATATCGAATGTTTGATTTCTTCGATCCTATGTACTTTGAAATCCCATCGAGATTTGATAATCAGAAATTTTTTCCCTTGAGCTCGTCGTATGTGTCAAAACTTGATTCAACTGCATCAGTAACAGTGGACATCCCTGATGATTGTCTTTCAAGTGACTGGTGGGGTGTGGCTGTATTTGTGGCCTTAGAAGCTGAAGTACCACAGGATTCAGAGGAAGCTTCTAAAGGTTTTGTGTTCAGCAGATCCATGCGCTTGTATTGGAACTTCGATACTCTTGGACCTGAAGATGGTCCCTCCTTATCACTATCTGCAGGTTCAACAGCATATAATGATCTTTACCTCATCACAATGGTAGTGAGTGGTGATTTTATATACTTGCGGAGACACCGAAGAGGGCACCGAAATTCCATGCAGGAACCCTTCAGCAAGCATAGAAGGCCAGAGTTCAAGGAAAACAGTTCGTTGCGTTTTGAAATGCGAGTGACAGGGTGCAAGATAAGGAAGTGTGGGTGGCGTCTGTTGCGCAAGGAAGATTATCTTGAAGACTTGCAAATGCTGAACAATGGTGGACTTGTTGTAGCACCTTCCGATTCCGAGCATTCAGATGGCATGAACAAATCATCTGTGAATGAACCCAAGGAGCAGGATGCTACTGCTTTGGATGTGATAGAAAGGTCAACTGAGAACTTCTCTTTGGGGAAAATGTTTCACAACTTCAGACAAGCACTTGGTTTAAGTGTTCTAGCTTTGGTATCAATGATGATTGGGGCTACAATAATCCATTCGCCTATGCATGATTTGCGCTTCAAAAAGTCCACGGCAACAAATGAGATCATAACTAACAAGATATCCTCCCATAATATTGTACTTAAGGTCAATACACCGCAATTGCAACGCAGTCCTCGTAAAAGAAATGTGAGCCAGCGTTTGCCATTTCCGGTATACCAGCCACCAAGGAGGTTGAGTTTCTCTCAGACACACTTTTGTTTAACTTAG	3681	0.389	MEDCSQNSKWKYHVFLSFRGEDTRLGFTDHLYAALVRKSIITFRDDEELARGEVISQKLLHAIEESLSAVVIISKNYATSAWCLDELVKILESKRLSGQQVFPIFYGVDPSDVRNQRGSFAEAFRKHEQKFTESKEKVQRWRDALREVANLSGWDSKDQHETKLIEEVVVQVWKKLELKFPSYYDGLVAIDARLEELYSILKLGSEDICFIGIWGMGGIGKTTLTTALFKIIKSQFDVSCFIANVREVSGERNQGLLQLQNKILSYLNIKGMVIETLSQGKDSLRNLLSNKKVLLVLDDVSSKTQLESLAGSHEWFGQGSRIIVTTRDKHLLISHTVLFEMYESKILNKSESLNLFCEKAFNEDAPKEGYTELSKIVVEYARGLPLTLEVLGSFLCGRSVSDWEDALIKIKQVPHDDIINKLRISYDMLEDEHKTIFLDIACFFKGWYKHKVVQILENCGLHPTVGINVLIEKLLVTFDGRVIWMHDMLEEMGKTIVFQESPNDPGRRSRLWSLEDIDKVLRKNKGTEIVQGIVLKSSPYTLYEAYWDPEAFSKMCNLSSLKVLVWWGYPLNALPLGVQLDELVHLQMINSKLNQLWNRNEYFGKLKVIDLSNSKDLRQTPNISGIPNLEELYLNDCTKLVEVHQSIRQHKKLMIVSLMGCVNLKTFPSVTALNLMNCKSLLYLPNSISNLKSLRILNISGCSKICTLPNGINQNKALKDIDLSRTAIRELDPSLFQLENIKRLSFRGCSGTTSNFSWEFQLPFGKKFRFFPSQTGLTLPPFVSALSSLTELDLSYCNLNDNSIPRDIDCLSYLERLNLSGNNFVRLPSHYIANLTKLRYLELEDCSQLRSLPMLPPHVRLYATDSDTKEANALDPQKIWKVFESSEKEFLQASVYRMFDFFDPMYFEIPSRFDNQKFFPLSSSYVSKLDSTASVTVDIPDDCLSSDWWGVAVFVALEAEVPQDSEEASKGFVFSRSMRLYWNFDTLGPEDGPSLSLSAGSTAYNDLYLITMVVSGDFIYLRRHRRGHRNSMQEPFSKHRRPEFKENSSLRFEMRVTGCKIRKCGWRLLRKEDYLEDLQMLNNGGLVVAPSDSEHSDGMNKSSVNEPKEQDATALDVIERSTENFSLGKMFHNFRQALGLSVLALVSMMIGATIIHSPMHDLRFKKSTATNEIITNKISSHNIVLKVNTPQLQRSPRKRNVSQRLPFPVYQPPRRLSFSQTHFCLT	1226

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre6g02508	1226	Gene3D	-	178	337	IPR027417	-
	Trre6g02508	1226	ProSiteProfiles	TIR domain profile.	10	176	IPR000157	GO:0007165
	Trre6g02508	1226	Pfam	TIR domain	11	182	IPR000157	GO:0007165
	Trre6g02508	1226	PRINTS	Disease resistance protein signature	210	225	-	-
	Trre6g02508	1226	PRINTS	Disease resistance protein signature	381	395	-	-
	Trre6g02508	1226	PRINTS	Disease resistance protein signature	689	705	-	-
	Trre6g02508	1226	PRINTS	Disease resistance protein signature	287	301	-	-
	Trre6g02508	1226	SUPERFAMILY	L domain-like	485	857	-	-
	Trre6g02508	1226	SMART	till_3	11	151	IPR000157	GO:0007165
	Trre6g02508	1226	Pfam	NB-ARC domain	196	412	IPR002182	GO:0043531
	Trre6g02508	1226	Gene3D	-	8	177	IPR035897	-
	Trre6g02508	1226	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	12	710	IPR044974	GO:0006952
	Trre6g02508	1226	MobiDBLite	consensus disorder prediction	1091	1111	-	-
	Trre6g02508	1226	SUPERFAMILY	Toll/Interleukin receptor TIR domain	5	154	IPR035897	-
	Trre6g02508	1226	FunFam	Disease resistance protein (TIR-NBS-LRR class)	8	178	-	-
	Trre6g02508	1226	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	176	440	IPR027417	-
	Trre6g02508	1226	Gene3D	-	346	430	IPR042197	-
	Trre6g02508	1226	Gene3D	Ribonuclease Inhibitor	509	670	IPR032675	-
	Trre6g02508	1226	Gene3D	Ribonuclease Inhibitor	671	870	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre6g02508	Trre-Chr6	22061025	22065927	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre6g02508	7	746	WRKY Transcription Factor Family	AT4G12020	28.382	9.34e-76	275

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre6g02508	-		-	psat:127083448	1756.88