Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02473 ATGGATTCTGAAACTGATGTTGGTGTTGTGGAGAAAGATCCAACTTTACGTTACGCACGGTATGATGAACTGTTAGGGAAAGGAGCATTCAAGACTGTATACAAAGCTTTTGATGAAGTAGATGGAATAGAAGTTGCATGGAACCAAATTTGTATAGAGGATGTGATGCAATCACCCCAAAATTTGGAGAAGTTGTATTCTGAGGTTCATCTCCTCAAGTCACTGAAACACGAAAATATCATTAAGTTGTATAGCTCTTGGGTGGATGAAAAGACCAGGACTATCAATATGATAACTGAATTGTTCACCTCTGGGAATTTGAGGCAGTATTGTAAGAAACATAAGAATGTGGATATGAAGGCAATCAAGAACTGGGCGAGGCAGATTCTTCGTGGTTTGTGCTTTTTGCACAGTCACAATCCTCCTGTTATTCACAGGGATCTAAAATGTGATAACATTTTTGTTAATGGGAATAATGGACAAGTTAAGATTGGAGATCTCGGATTGGCAATTGTCATGCAGCAGCCTACTGCCCGGAGTGTTATCGGTACTCCGGAATTCATGGCTCCAGAGCTTTATGAAGAAGAATACAATGAACTTGTTGACATATATTCCTTTGGCATGTGTATCTTGGAAATGATCACGTGTGAGTACCCGTATAGTGAATGCAAAAATCCGGCGCAGATATATAAGAAAGTTACCTCTGGTATAAAGCCTGCTGCTCTTGCTAAAGTGAATGATCCTGAAGTGAAGCAATTTATAGAGAAGTGTTTAGTTCCAGCATCTATGAGATTGCCTGCATCTGAACTGCTGAAAGACCCATTCCTCGCAACTGGAAATGCGAAGGACATCTATCATGATCCCCTGCGGCTGCCTAATTCCCCCACTAAATCAATGAATCCACCAATTTGTGAGCCCCATCCCATGGAGATAGATTCAAACCTCAGGCATACATCAACTGGCTCCTCTGTGGAAAGAATTAAAGAATCTTCTCAAGTTTCAATTCTTGATCTCACGAGGAAGACAGAGAACAATGAATTTAGGTTAAGAGGGGAGAAGAATGCTGAACGTACAATTTCACTTACGCTGCGAATTGCTGATGCTCATGGTGGAGCTAGGAATATCCATTTTCCATTCTATATCGATTCCGACACAACAATTTCAATTGCTGAGGAGATGGTGAAACATCTTGAACTCAAGGATGAGGATGTAGCTGTCATTGCTGAGCTAATACACAACATGGTTTTTGAGCTTGTGCCTAACTGGAAACCCTTGTGCGAGAACCTCTCATCTGGAACAGATCATGTGTACAGTCCTTCAGAAGCTCAGAATGGTGAACAGTTAAACTGCCATTGGACATTGGGATCAAATAACTTTGATATGAAGGCAATGTATGAGGATTTAGGTCACTCACAGCATGACGGGGAAGATCAGGACAAACAAGAATCTGTTTCATCAGATATTTCAGCTGAGTATGGGATTGCAGTTGCCACTGATTCTAAAGGTGTAGAGCCTGATTGTTTTATTCTTCATGAGTGTTGCAAGGGATCCCATGGCTTAAATTCCAATTCAGATGTCAGGATTTGTGGTCAAGAAGATGGAAACAATAATCAATCAGAGAACTCAGCAGTCTCATGGTCCAGTCCATCCATAAACCTTGACATCTCAAGCAAATGTTCTCTTTCTTCACAGGACCAAGATCATTTAAATGAGCTAGAGTTGGAGCTTGAAGCAATTGAAATTCAGTATCAGCAAAGTTTTCGCGAGCTTGTGAAGATGAGGGAGGAAGCCATAGAAAATGTCAAAAAGAGATGGACTTCGAAGAAGAACATATCAGTTATGTGA 1845 0.4081 MDSETDVGVVEKDPTLRYARYDELLGKGAFKTVYKAFDEVDGIEVAWNQICIEDVMQSPQNLEKLYSEVHLLKSLKHENIIKLYSSWVDEKTRTINMITELFTSGNLRQYCKKHKNVDMKAIKNWARQILRGLCFLHSHNPPVIHRDLKCDNIFVNGNNGQVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEEEYNELVDIYSFGMCILEMITCEYPYSECKNPAQIYKKVTSGIKPAALAKVNDPEVKQFIEKCLVPASMRLPASELLKDPFLATGNAKDIYHDPLRLPNSPTKSMNPPICEPHPMEIDSNLRHTSTGSSVERIKESSQVSILDLTRKTENNEFRLRGEKNAERTISLTLRIADAHGGARNIHFPFYIDSDTTISIAEEMVKHLELKDEDVAVIAELIHNMVFELVPNWKPLCENLSSGTDHVYSPSEAQNGEQLNCHWTLGSNNFDMKAMYEDLGHSQHDGEDQDKQESVSSDISAEYGIAVATDSKGVEPDCFILHECCKGSHGLNSNSDVRICGQEDGNNNQSENSAVSWSSPSINLDISSKCSLSSQDQDHLNELELELEAIEIQYQQSFRELVKMREEAIENVKKRWTSKKNISVM 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02473 614 SUPERFAMILY Protein kinase-like (PK-like) 22 322 IPR011009 -
Trre6g02473 614 Gene3D - 357 446 - -
Trre6g02473 614 Pfam Protein kinase domain 22 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g02473 614 FunFam Probable serine/threonine-protein kinase WNK1 3 100 - -
Trre6g02473 614 Gene3D Transferase(Phosphotransferase) domain 1 102 283 - -
Trre6g02473 614 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 9 603 - -
Trre6g02473 614 FunFam probable serine/threonine-protein kinase WNK9 102 281 - -
Trre6g02473 614 CDD STKc_WNK 17 276 - -
Trre6g02473 614 Gene3D Phosphorylase Kinase; domain 1 2 100 - -
Trre6g02473 614 ProSiteProfiles Protein kinase domain profile. 19 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g02473 614 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 359 415 IPR024678 GO:0004674|GO:0005524
Trre6g02473 614 SMART serkin_6 19 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g02473 614 Coils Coil 562 596 - -
Trre6g02473 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02473 Trre-Chr6 21714334 21716862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02473 10 613 MAP Kinase Kinase Kinase AT5G41990 52.318 0.0 565
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Trre6g02473 Pkinase 1.2e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02473 K08867 - gmx:100783717 895.575