Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02472 ATGACGGAGGTGGCAAGATCAGTAGTTCACGAGGTTTTAGGAGACGGAATCATCGACGTCGATGAACCAATTGTCAGTTACATCGTCAACGTCCTCGCCGACGAAGATTTCGACTTCGGACTCGACGGCGAAGGCGCTTTTGATGCTCTCGGAGATCTTCTCGTCGCCGCCGGCTGTGTCCCCGACTTCCCTGAGTGTCGCTCCGTATGCAGCAAACTTTCCGACAAGTTTGGGAAGCACGGTTTGGTGAAGGCAAAGCCAACGGTACGAAGCCTTGCCGCGCCGTTTCGTATGAATGAGGGATTGGATGACGGTGAAGCTCCGAAGAAGAAACCTGAGCCAGTTGACGGTCCTCTCTTATCAGAACGTGATAAATTGAAGATTGAAAGGAGAAAGAGGAAAGATGAACGCCAGAGAGAGGCGAAGTACCAATTGCATTTGGCGGAGATGGAAGCGGTTCGAGCAGGGATGCCTGTTGCGTGTGTGAAGCATGAGGCTGGTGGTGGACACACTGTGAAGGATATTCATATGGATAATTTCACTATTTCTGTTGGTGGTCATGATCTCATTGTTGATGGTTCTGTTACACTCTCCTTTGGAAGGCATTATGGGCTTGTTGGTAGAAATGGGACTGGTAAAACAACTTTCCTAAGGCACATGGCCATGCATGCCATAGATGGAATTCCCAGGAATTGTCAGATTTTACACGTCGAGCAAGAAGTCGTTGGTGATGATACATCCGCCTTGCAGTGTGTTCTTAATACTGATATTGAGAGAGCTCAGCTTCTGGAGGAAGAAGCTCAACTAATAGCCAAACAGAGGGAAACTGAGGACAGTACCGAAAAGGGCAATGAAGCGAATGGAGTTGTGAAAGTAGATGCTATTTCACAAAGGCTTGAGCAAATATACAAGAGGCTTGAGTTAATTGATGCTGATGCTGCTGAGTCACGAGCAGCATCCATACTTGCTGGTCTGAGTTTCTCTCCTGAGATGCAGAAGAAGGCAACAAAAACATTTTCTGGAGGGTGGAGGATGCGGATAGCTCTTGCTCGTGCACTGTTTATTGAGCCTGATATGTTGCTTCTTGACGAGCCTACGAATCATCTCGATCTTCATGCTGTCTTATGGCTTGAATCTTACTTGGTTAAATGGCCAAAAACATTTATTGTCGTTTCTCATGCTAGAGAATTTTTAAACACGGTGGTTACTGATATAATTCACTTACAAAACCAAAAGCTAACTACTTATAAAGGGAATTATGATATTTTTGAAAGGACTCGGGAAGAACAAATTAAGAACCAACAAAAAGCAGTAGAGGCACATGAGCGTTCAAGAGCTCATATGCAGACCTTCATTGACAAGTTTCGCTATAATGCCAAGAGGGCATCACTTGTTCAATCTAGAATCAAGGCTCTTGATCGATTGGGCCATGTAGATGCAATTATTAATGATCCCGACTACAAGTTTGAGTTCCCCACTCCAGATGATAGACCAGGCGCACCAATAATAAGTTTCAGTGATGCATCATTTGGTTATCCTGGAGGGCCCATTCTATTTAGGAATTTGAACTTTGGGATTGATCTTGACAGCCGTATTGCAATGGTTGGACCAAATGGTATCGGTAAATCTACTATACTTAAGTTAATTGCTGGGGAACTACAGCCAAGTTCTGGGACTGTCTTCCGCTCTGCCAAGGTTCGTATAGCGGTGTTCAGTCAGCACCATGTTGATGGACTTGACTTATCCTCAAATCCTCTTCTATATATGATGCGCTGCTATCCTGGAGTTCCAGAACAGAAACTTCGAGGTCACTTAGGTTCTTTTGGTGTCACTGGAAATCTTGCACTTCAACCCATGTATACTTTGTCAGGTGGTCAGAAAAGTAGAGTTGCCTTTGCAAAGATAACTTTTAAGAAGCCACACATAATATTGCTTGATGAACCATCGAATCATTTGGATTTGGATGCTGTTGAGGCGCTTATTCAAGGTCTTGTGCTGTTCCAAGGAGGCATTCTCATGGTGAGTCACGATGAGCATCTTATCTCTGGTAGCGTGGAGGAGCTATGGATTGTATCGGAGGGAAGAGTGGCACCATTCCATGGCAGCTTCGCAGAGTATAAGAAGATATTACACTCATCTTAG 2142 0.4472 MTEVARSVVHEVLGDGIIDVDEPIVSYIVNVLADEDFDFGLDGEGAFDALGDLLVAAGCVPDFPECRSVCSKLSDKFGKHGLVKAKPTVRSLAAPFRMNEGLDDGEAPKKKPEPVDGPLLSERDKLKIERRKRKDERQREAKYQLHLAEMEAVRAGMPVACVKHEAGGGHTVKDIHMDNFTISVGGHDLIVDGSVTLSFGRHYGLVGRNGTGKTTFLRHMAMHAIDGIPRNCQILHVEQEVVGDDTSALQCVLNTDIERAQLLEEEAQLIAKQRETEDSTEKGNEANGVVKVDAISQRLEQIYKRLELIDADAAESRAASILAGLSFSPEMQKKATKTFSGGWRMRIALARALFIEPDMLLLDEPTNHLDLHAVLWLESYLVKWPKTFIVVSHAREFLNTVVTDIIHLQNQKLTTYKGNYDIFERTREEQIKNQQKAVEAHERSRAHMQTFIDKFRYNAKRASLVQSRIKALDRLGHVDAIINDPDYKFEFPTPDDRPGAPIISFSDASFGYPGGPILFRNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCYPGVPEQKLRGHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWIVSEGRVAPFHGSFAEYKKILHSS 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02472 713 FunFam ABC transporter F family member 3 127 448 - -
Trre6g02472 713 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 160 711 - -
Trre6g02472 713 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 485 700 IPR027417 -
Trre6g02472 713 Pfam ABC transporter 194 367 IPR003439 GO:0005524
Trre6g02472 713 CDD ABCF_EF-3 175 412 - -
Trre6g02472 713 ProSitePatterns ABC transporters family signature. 622 636 IPR017871 GO:0005524|GO:0016887
Trre6g02472 713 ProSitePatterns ABC transporters family signature. 339 353 IPR017871 GO:0005524|GO:0016887
Trre6g02472 713 Gene3D - 467 712 IPR027417 -
Trre6g02472 713 Gene3D - 132 448 IPR027417 -
Trre6g02472 713 SMART AAA_5 199 412 IPR003593 GO:0016887
Trre6g02472 713 SMART AAA_5 528 695 IPR003593 GO:0016887
Trre6g02472 713 MobiDBLite consensus disorder prediction 99 140 - -
Trre6g02472 713 MobiDBLite consensus disorder prediction 102 140 - -
Trre6g02472 713 Pfam ABC transporter 406 487 IPR032781 -
Trre6g02472 713 CDD ABCF_EF-3 503 695 - -
Trre6g02472 713 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 175 435 IPR003439 GO:0005524
Trre6g02472 713 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 503 712 IPR003439 GO:0005524
Trre6g02472 713 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 440 IPR027417 -
Trre6g02472 713 Pfam ABC transporter 520 650 IPR003439 GO:0005524
Trre6g02472 713 FunFam ATP-binding cassette sub-family F member 3 465 713 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02472 Trre-Chr6 21699885 21708774 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02472 465 664 Calmodulin-binding Proteins AT2G36910 27.155 5.55e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02472 K06158 - gmx:547980 1239.17