Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02460 ATGTTTCCAGAGGAACTTCAACTTCAGCTTTATCAAGCTTTCATATTCTCAATTCCTATACTTTTTTCAATAATTCTTTTTCTCCTTTTTTACTTGTTTTATCTCAAGAGAAGAGCTTCATCTTTCTCTCCACACTTACTTCCAAGGATTAACCCTCCAACTACATATCGTTATTATTCTTCTTCCTCACCTCGTCGTTTGGATTTGACGGTGCAATTCTTGGACAAACTTCCTAGAATTTTGTTTGACGAGGATTTACAAGCAAGGGATTCAGTATGTTGTGTATGTTTGGGAGAATTTGAGGTGAAAGAAGAGTTGCTACAGATTCCATATTGCAAGCATGTGTTCCACATAGATTGCATACATCATTGGCTACAATCAAATTCCACTTGTCCACTTTGTAGATGTTCCATCATTCCCACTACCACAAAGTTCCTTAATCCAGCACCACCTATTAATATTATTATATCAGACCCACCACACCAAAGTCCTATTAATTCAGATTCTCCATTACAAATTTCATCATTGCCAAATGAAGATGGTGCTTCCTCAAATATCATCATGTCAAGGGAGTGA 576 0.3663 MFPEELQLQLYQAFIFSIPILFSIILFLLFYLFYLKRRASSFSPHLLPRINPPTTYRYYSSSSPRRLDLTVQFLDKLPRILFDEDLQARDSVCCVCLGEFEVKEELLQIPYCKHVFHIDCIHHWLQSNSTCPLCRCSIIPTTTKFLNPAPPINIIISDPPHQSPINSDSPLQISSLPNEDGASSNIIMSRE 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02460 191 MobiDBLite consensus disorder prediction 166 191 - -
Trre6g02460 191 SUPERFAMILY RING/U-box 71 142 - -
Trre6g02460 191 PANTHER RING-H2 FINGER PROTEIN ATL16 15 172 IPR044600 GO:0016567|GO:0016740
Trre6g02460 191 SMART ring_2 93 134 IPR001841 -
Trre6g02460 191 FunFam Putative E3 ubiquitin-protein ligase RHA4A isoform A 62 140 - -
Trre6g02460 191 CDD RING-H2_EL5-like 93 135 - -
Trre6g02460 191 Pfam Ring finger domain 93 135 IPR001841 -
Trre6g02460 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 140 IPR013083 -
Trre6g02460 191 ProSiteProfiles Zinc finger RING-type profile. 93 135 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02460 Trre-Chr6 21475006 21477114 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02460 7 166 C3H Transcription Factor Family AT1G33480 40.606 2.81e-33 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02460 K19039 - gmx:100794298 251.906