Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02459 ATGAATGTAAGGAAACATGATATGATGCTAAGTAGTGTTCCAAAAACTTCAACAATTACAAATTCTCCAACTCCTTCAAATATGTTTCCAGAGGAACTTCAACTTCAGCTTTATCAAGCTTTCATATTCTCAATTCCTATACTTTTTTCAATAATTCTTTTTCTCCTTTTTTACTTGTTTTATCTCAAGAGAAGAGCTTCATCTTTCTCTCCACACTTACTTCCAAGGATTAACCCTCCAACTACATATCGTTATTATTCTTCTTCCTCACCTCGTCGTTTGGATTTGACGGTGCAATTCTTGGACAAACTTCCTAGAATTTTGTTTGACGAGGATTTACAAGCAAGGGATTCAGTATGTTGTGTATGTTTGGGAGAATTTGAGGTGAAAGAAGAGTTGCTACAGATTCCATATTGCAAGCATGTGTTCCACATAGATTGCATACATCATTGGCTACAATCAAATTCCACTTGTCCACTTTGTAGATGTTCCATCATTCCCACTACCACAAAGTTCCTTAATCCAGCACCACCTATTAATATTATTATATCAGACCCACCACACCAAAGTCCTATTAATTCAGATTCTCCATTACAAATTTCATCATTGCCAAATGAAGATGGTGCTTCCTCAAATATCATCATGTCAAGGGAGTGA 657 0.3592 MNVRKHDMMLSSVPKTSTITNSPTPSNMFPEELQLQLYQAFIFSIPILFSIILFLLFYLFYLKRRASSFSPHLLPRINPPTTYRYYSSSSPRRLDLTVQFLDKLPRILFDEDLQARDSVCCVCLGEFEVKEELLQIPYCKHVFHIDCIHHWLQSNSTCPLCRCSIIPTTTKFLNPAPPINIIISDPPHQSPINSDSPLQISSLPNEDGASSNIIMSRE 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02459 218 SMART ring_2 120 161 IPR001841 -
Trre6g02459 218 CDD RING-H2_EL5-like 120 162 - -
Trre6g02459 218 Pfam Ring finger domain 120 162 IPR001841 -
Trre6g02459 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 167 IPR013083 -
Trre6g02459 218 FunFam Putative E3 ubiquitin-protein ligase RHA4A isoform A 89 167 - -
Trre6g02459 218 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 15 175 - -
Trre6g02459 218 MobiDBLite consensus disorder prediction 193 218 - -
Trre6g02459 218 SUPERFAMILY RING/U-box 98 169 - -
Trre6g02459 218 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02459 Trre-Chr6 21475006 21477195 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02459 9 167 C3H Transcription Factor Family AT4G10150 38.365 1.14e-33 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02459 K19039 - gmx:100794298 255.373