Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02437 ATGGACAAGGAAGGTGCTGAACTTCAAACTGTTGCAGTTTCAATGATATCAGATTCTTCTCTTCTTCATAATCAGTCCAGAAGACCTAGTCTCTCATCCTTACAAATACCAACAAGGACACTAGAAAGTGCATTATCTTCTTCTACTAAGACAGATGGTCCTACATTGTCAAGTCCAGGTTCCACTAGAGGACTGCCACCAAGGCCACATTCTACTACCAAAGTGAAGTCCTCTATGAGAAATTTAATTTCTGATAGGAGCTTTAGGACAAAAACTTGTTCAGAAGATAGTGAAAAGACTGTTTTGATTGTTCCTGATACTTTATCATCGGATAATGGTCCTTTGGATAATAAGCCTTCAACTTCAAGGTCCCTTTCACTTAATAAGATTTTGTTCCCTTCATCAACAAAAGCTGCACATTCGTTACCGGTTACTCCAATTGCAAATTCAGGCACAGAGAATGTGCATGGAAGAAATGTAGGGGGTGATTCCGATTTAAATAAAACGAAAGTGAATAAGCATATGACTCGATCATTTTCGGTTCCGGTTAATGTCAAGGCTACTAATTTAAGGCCTACAGATTCTAGGCGTCTGGTTCGTGTAATTTCAGTAAGACCACATCCAGCAACTACTGATGACAATTCAACTCGCAGTGATTCAATGCAAGAGATTGTCATTGAAGATGCTTCCGAGGATATTCCAGAAGAAGAAGCAGTTTGTAGGATTTGTTTGGTGGAGCTTGCGGAAGGGGGAGATACGCTTAGGATGGACTGCAGTTGTAAAGGTGAGCTTGCACTTGCTCACCAAGACTGTGCAGTAAAGTGGTTTAGTATCAAAGGAAATAAGACATGTGATGTCTGCAAACAGGATGTCCGGAACCTTCCAGTAACACTTTTGAAAATTTCTAGCCCTCCAACTGTTGTTCGGCAGACATTGACTGCATCGCAGCAGAGAGCAGTAACAAATTACAGGATCTGGCAGGATGTACCAGTACTTGTGTTGGTCAGCATGCTTGCATACTTTTGCTTTCTGGAGGAACTACTGGTTTCGGATTTGGGCTCACGTGCTCTCGCAATTTCATTGCCTTTCTCCTGCATTTTAGGCCTCCTTTCTTCTATGATTGCTTCAACCATGGTGAGCAGGAGTTACATATGGGCTTATGCTTGCTTCCAGTTTGCATTTGTCATCCTGTTTGCTCATATATTCTATTCTATACTTAATGTTAATGCGCTTTTCTCGGTTCTTCTTTCAACATTCACCGGATTTGGAATTTCAATCAGCATGAATTCTCTACTAATGGAATATATTAGATGGAAAACAAATAGGCAGATTCAATCTGCTAATCAAAATATTATTTCGAGACAGCTTCGGCAGCAGCAGCAGCAAGAAACTCAAAGACAACAACATCAACTGCAAAGGATGCAACAAGAACAGCACCAATGA 1443 0.4075 MDKEGAELQTVAVSMISDSSLLHNQSRRPSLSSLQIPTRTLESALSSSTKTDGPTLSSPGSTRGLPPRPHSTTKVKSSMRNLISDRSFRTKTCSEDSEKTVLIVPDTLSSDNGPLDNKPSTSRSLSLNKILFPSSTKAAHSLPVTPIANSGTENVHGRNVGGDSDLNKTKVNKHMTRSFSVPVNVKATNLRPTDSRRLVRVISVRPHPATTDDNSTRSDSMQEIVIEDASEDIPEEEAVCRICLVELAEGGDTLRMDCSCKGELALAHQDCAVKWFSIKGNKTCDVCKQDVRNLPVTLLKISSPPTVVRQTLTASQQRAVTNYRIWQDVPVLVLVSMLAYFCFLEELLVSDLGSRALAISLPFSCILGLLSSMIASTMVSRSYIWAYACFQFAFVILFAHIFYSILNVNALFSVLLSTFTGFGISISMNSLLMEYIRWKTNRQIQSANQNIISRQLRQQQQQETQRQQHQLQRMQQEQHQ 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02437 480 Coils Coil 457 477 - -
Trre6g02437 480 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 226 295 IPR013083 -
Trre6g02437 480 PANTHER OS02G0165000 PROTEIN 23 457 - -
Trre6g02437 480 SUPERFAMILY RING/U-box 236 291 - -
Trre6g02437 480 SMART ringv_2 239 288 IPR011016 GO:0008270
Trre6g02437 480 ProSiteProfiles Zinc finger RING-CH-type profile. 232 294 IPR011016 GO:0008270
Trre6g02437 480 MobiDBLite consensus disorder prediction 18 80 - -
Trre6g02437 480 CDD RING_CH-C4HC3_MARCH 240 288 - -
Trre6g02437 480 MobiDBLite consensus disorder prediction 144 168 - -
Trre6g02437 480 Pfam RING-variant domain 240 287 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02437 Trre-Chr6 21234423 21240474 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02437 234 294 C3H Transcription Factor Family AT2G37950 46.774 2.98e-13 67.0