Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre6g02425 | ATGTACTTGCCTTTCGAAGCGAAAGAGGATTCTTCAAGAGGAACTGTTAATTTCGTTGTAGACAAAAACGGAACTGAGTATTCGCCTGAGGAATTGGTTGCAATGGTTTTGACTTACGCTGCGAATTTGGCTGAGTTTCATTCGAACATTCCGATTAAAGATGCGGTGATTGCTGTTCCACCTTATTTTGGACAAGTTGAACGGAGAGGATTGCTTCATGCAGCGGAGTTAGCCGGGATTAATGTTCTTTCGTTGATTAATGAGTATTCCGGTGCGGCTTTGCAGTATGGGATTGATAAGGATTTCTCAAATGAATCAAGGCATGTTGTTTTCTATGATATGGGTTCTAGTAGTACCTATGCTGCACTTGTGTATTTCTCCTCTTATAAGAGTAAAGAGTATGGGAAAACAGTTTCGGTGAATCAGTTTCAGGTCAAGGATGTGCGTTGGAACCCTGAGCTAGGTGGTCAGCATATGGAAATGCGATTGGTAGAGTATTTTGCTAATGAATTCAATGCACAAGTTGGTGGTGGAATTGATGTGAGAAAATTTCCCAAGGCTATCGCTAAGTTAAAGAAACAGGTTAAACGGACAAAAGAAATTCTTAGCGCAAACACTGCAGCTCCCATTTCAGTTGAGTCGCTTCATGGTGATTTGGACTTCAGGAGCTCAATAACCCGCGAGAAATTTGAAGAGCTTTGTGAAGATATTTGGGAAAAATCTCTGTTACCGTTGAAAGAGTTGCTCGAGCATTCAGGCTTGTCAACAGATCAAATATACGCAGTGGAGTTAATTGGAGGTGCTACCAGAGTGCCAAAATTACAGGTTTGA | 831 | 0.414 | MYLPFEAKEDSSRGTVNFVVDKNGTEYSPEELVAMVLTYAANLAEFHSNIPIKDAVIAVPPYFGQVERRGLLHAAELAGINVLSLINEYSGAALQYGIDKDFSNESRHVVFYDMGSSSTYAALVYFSSYKSKEYGKTVSVNQFQVKDVRWNPELGGQHMEMRLVEYFANEFNAQVGGGIDVRKFPKAIAKLKKQVKRTKEILSANTAAPISVESLHGDLDFRSSITREKFEELCEDIWEKSLLPLKELLEHSGLSTDQIYAVELIGGATRVPKLQV | 276 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre6g02425 | 276 | Gene3D | Actin; Chain A, domain 4 | 156 | 239 | - | - | |
Trre6g02425 | 276 | PRINTS | 70kDa heat shock protein signature | 55 | 75 | - | - | |
Trre6g02425 | 276 | PRINTS | 70kDa heat shock protein signature | 259 | 275 | - | - | |
Trre6g02425 | 276 | Gene3D | - | 1 | 132 | - | - | |
Trre6g02425 | 276 | SUPERFAMILY | Actin-like ATPase domain | 3 | 100 | IPR043129 | - | |
Trre6g02425 | 276 | FunFam | Heat shock 70 kDa protein 4 | 155 | 240 | - | - | |
Trre6g02425 | 276 | FunFam | Heat shock protein 17 | 104 | 200 | - | - | |
Trre6g02425 | 276 | Pfam | Hsp70 protein | 12 | 275 | IPR013126 | GO:0005524|GO:0140662 | |
Trre6g02425 | 276 | SUPERFAMILY | Actin-like ATPase domain | 106 | 275 | IPR043129 | - | |
Trre6g02425 | 276 | FunFam | Heat shock 70 kDa protein 4 | 14 | 103 | - | - | |
Trre6g02425 | 276 | PANTHER | HSC70CB, ISOFORM G-RELATED | 2 | 275 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre6g02425 | Trre-Chr6 | 21104237 | 21106997 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre6g02425 | 26 | 275 | Calmodulin-binding Proteins | AT5G02500 | 32.271 | 1.59e-43 | 153 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre6g02425 | K09486 | - | gmx:100788296 | 460.685 |