Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02425 ATGTACTTGCCTTTCGAAGCGAAAGAGGATTCTTCAAGAGGAACTGTTAATTTCGTTGTAGACAAAAACGGAACTGAGTATTCGCCTGAGGAATTGGTTGCAATGGTTTTGACTTACGCTGCGAATTTGGCTGAGTTTCATTCGAACATTCCGATTAAAGATGCGGTGATTGCTGTTCCACCTTATTTTGGACAAGTTGAACGGAGAGGATTGCTTCATGCAGCGGAGTTAGCCGGGATTAATGTTCTTTCGTTGATTAATGAGTATTCCGGTGCGGCTTTGCAGTATGGGATTGATAAGGATTTCTCAAATGAATCAAGGCATGTTGTTTTCTATGATATGGGTTCTAGTAGTACCTATGCTGCACTTGTGTATTTCTCCTCTTATAAGAGTAAAGAGTATGGGAAAACAGTTTCGGTGAATCAGTTTCAGGTCAAGGATGTGCGTTGGAACCCTGAGCTAGGTGGTCAGCATATGGAAATGCGATTGGTAGAGTATTTTGCTAATGAATTCAATGCACAAGTTGGTGGTGGAATTGATGTGAGAAAATTTCCCAAGGCTATCGCTAAGTTAAAGAAACAGGTTAAACGGACAAAAGAAATTCTTAGCGCAAACACTGCAGCTCCCATTTCAGTTGAGTCGCTTCATGGTGATTTGGACTTCAGGAGCTCAATAACCCGCGAGAAATTTGAAGAGCTTTGTGAAGATATTTGGGAAAAATCTCTGTTACCGTTGAAAGAGTTGCTCGAGCATTCAGGCTTGTCAACAGATCAAATATACGCAGTGGAGTTAATTGGAGGTGCTACCAGAGTGCCAAAATTACAGGTTTGA 831 0.414 MYLPFEAKEDSSRGTVNFVVDKNGTEYSPEELVAMVLTYAANLAEFHSNIPIKDAVIAVPPYFGQVERRGLLHAAELAGINVLSLINEYSGAALQYGIDKDFSNESRHVVFYDMGSSSTYAALVYFSSYKSKEYGKTVSVNQFQVKDVRWNPELGGQHMEMRLVEYFANEFNAQVGGGIDVRKFPKAIAKLKKQVKRTKEILSANTAAPISVESLHGDLDFRSSITREKFEELCEDIWEKSLLPLKELLEHSGLSTDQIYAVELIGGATRVPKLQV 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02425 276 Gene3D Actin; Chain A, domain 4 156 239 - -
Trre6g02425 276 PRINTS 70kDa heat shock protein signature 55 75 - -
Trre6g02425 276 PRINTS 70kDa heat shock protein signature 259 275 - -
Trre6g02425 276 Gene3D - 1 132 - -
Trre6g02425 276 SUPERFAMILY Actin-like ATPase domain 3 100 IPR043129 -
Trre6g02425 276 FunFam Heat shock 70 kDa protein 4 155 240 - -
Trre6g02425 276 FunFam Heat shock protein 17 104 200 - -
Trre6g02425 276 Pfam Hsp70 protein 12 275 IPR013126 GO:0005524|GO:0140662
Trre6g02425 276 SUPERFAMILY Actin-like ATPase domain 106 275 IPR043129 -
Trre6g02425 276 FunFam Heat shock 70 kDa protein 4 14 103 - -
Trre6g02425 276 PANTHER HSC70CB, ISOFORM G-RELATED 2 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02425 Trre-Chr6 21104237 21106997 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02425 26 275 Calmodulin-binding Proteins AT5G02500 32.271 1.59e-43 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02425 K09486 - gmx:100788296 460.685