Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02424 ATGAGAGACCTAATAGGGAAACCCTACATTTTTGTTAAGAATTTTCTAGATTCAATGTACTTGCCTTTCGAAGCGAAAGAGGATTCTTCAAGAGGAACTGTTAATTTCGTTGTAGACAAAAACGGAACTGAGTATTCGCCTGAGGAATTGGTTGCAATGGTTTTGACTTACGCTGCGAATTTGGCTGAGTTTCATTCGAACATTCCGATTAAAGATGCGGTGATTGCTGTTCCACCTTATTTTGGACAAGTTGAACGGAGAGGATTGCTTCATGCAGCGGAGTTAGCCGGGATTAATGTTCTTTCGTTGATTAATGAGTATTCCGGTGCGGCTTTGCAGTATGGGATTGATAAGGATTTCTCAAATGAATCAAGGCATGTTGTTTTCTATGATATGGGTTCTAGTAGTACCTATGCTGCACTTGTGTATTTCTCCTCTTATAAGAGTAAAGAGTATGGGAAAACAGTTTCGGTGAATCAGTTTCAGGTCAAGGATGTGCGTTGGAACCCTGAGCTAGGTGGTCAGCATATGGAAATGCGATTGGTAGAGTATTTTGCTAATGAATTCAATGCACAAGTTGGTGGTGGAATTGATGTGAGAAAATTTCCCAAGGCTATCGCTAAGTTAAAGAAACAGGTTAAACGGACAAAAGAAATTCTTAGCGCAAACACTGCAGCTCCCATTTCAGTTGAGTCGCTTCATGGTGATTTGGACTTCAGGAGCTCAATAACCCGCGAGAAATTTGAAGAGCTTTGTGAAGATATTTGGGAAAAATCTCTGTTACCGTTGAAAGAGTTGCTCGAGCATTCAGGCTTGTCAACAGATCAAATATACGCAGTGGAGTTAATTGGAGGTGCTACCAGAGTGCCAAAATTACAGGTTTGA 885 0.4079 MRDLIGKPYIFVKNFLDSMYLPFEAKEDSSRGTVNFVVDKNGTEYSPEELVAMVLTYAANLAEFHSNIPIKDAVIAVPPYFGQVERRGLLHAAELAGINVLSLINEYSGAALQYGIDKDFSNESRHVVFYDMGSSSTYAALVYFSSYKSKEYGKTVSVNQFQVKDVRWNPELGGQHMEMRLVEYFANEFNAQVGGGIDVRKFPKAIAKLKKQVKRTKEILSANTAAPISVESLHGDLDFRSSITREKFEELCEDIWEKSLLPLKELLEHSGLSTDQIYAVELIGGATRVPKLQV 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02424 294 PANTHER HSC70CB, ISOFORM G-RELATED 2 293 - -
Trre6g02424 294 SUPERFAMILY Actin-like ATPase domain 3 118 IPR043129 -
Trre6g02424 294 SUPERFAMILY Actin-like ATPase domain 124 293 IPR043129 -
Trre6g02424 294 Gene3D - 2 53 - -
Trre6g02424 294 FunFam Heat shock protein 17 122 218 - -
Trre6g02424 294 Gene3D Actin; Chain A, domain 4 173 258 - -
Trre6g02424 294 FunFam Heat shock 70 kDa protein 4 30 121 - -
Trre6g02424 294 CDD HYOU1-like_NBD 1 293 - -
Trre6g02424 294 Gene3D - 119 293 - -
Trre6g02424 294 Pfam Hsp70 protein 17 293 IPR013126 GO:0005524|GO:0140662
Trre6g02424 294 Gene3D - 54 118 - -
Trre6g02424 294 FunFam Heat shock 70 kDa protein 4 173 258 - -
Trre6g02424 294 PRINTS 70kDa heat shock protein signature 277 293 - -
Trre6g02424 294 PRINTS 70kDa heat shock protein signature 73 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02424 Trre-Chr6 21104237 21107051 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02424 44 293 Calmodulin-binding Proteins AT5G02500 32.271 3.71e-43 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02424 K09486 - gmx:100786898 480.33