Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02404 ATGAGAATAAAAAGCGTCGTCACCGGTGTCCGCCGCCGTAGTATTACTGCTTCCGTCTCTCCTATTCCTAATCTCTCCACCACCGCCCAGGACAACAACCACAATGCAACCGTCTACGACAGCGACACCAGCAACGACAACCACACACATGCTCCAATTCCCGATTTCGTTCCCGATACCGATATAGAAGATTCGTTAGACGAAAACAGTTGCATTACTTGCAATAAAACCGGAGGAGCATTACTGGTATGTACCCAAACCGATTGCCCTATTACTGTTCACTTCAATTGCATCGGTTCCGAACCTAATTTCGATCATTCTGGAAACTTCTTTTGTCCTTACTGCTCCTACAAACGAGCTTGGAAGAAAACTAGAGAATTAAGAGAAAAAGCTGTTAGAGCGAAGAATGCTCTTTCTAGCTTTTTGGATAAAGGCCAAAGCCGCCCTGTCGAGCCTGTTAAACCGGAATCGGTTCTGGATCATGTAAACCGGAATGAACATGAACCGGAAGTTTCTGGTTCTGAGAAAGGAGAAAAACAAAATGATAATGATAATGATAATGATAACGATAATGATGAAGATAAAGATAAAGGAAATGTTTCTGAATCGGTGATTTCGGTTAGTGAAACTAAAGATTCGGATTCATCGTTTTGCATATCAGTGAAGAAAGGTCGTGCCAATGCTAAACCGAAGGTTGCTTCTGTGAAAAAACCTGTGTTACCGAAACGGAAAGCTGCTGATGCTGATGCTGATGCTGGTCGTGGTGGTGGTGGTGGTGATGATGACGGGGAGGAGGAGGAAGTTACCAGTTCTAGAAGTACTATAAGTCGACGAAAGGATGTTAAGAAGCATCATTTGTTTACTGGAAAGCGTAGGAAATTGTTTTGGTCAGCTGAAGAAGAAAAAGCTCTCAAGGAAGGAGTGTCGAAGTTCTCAACAGAAAATCAAAATATCCCTTGGAGGAAAATTTTAGAATTTGGTTGTCGTGTGTTTGATAGCACTCGTACTCCTGTTGATCTCAAGGATAAATGGAGGAACCTCATGAAGGAAGGAGGCAAGAAGTAG 1065 0.4282 MRIKSVVTGVRRRSITASVSPIPNLSTTAQDNNHNATVYDSDTSNDNHTHAPIPDFVPDTDIEDSLDENSCITCNKTGGALLVCTQTDCPITVHFNCIGSEPNFDHSGNFFCPYCSYKRAWKKTRELREKAVRAKNALSSFLDKGQSRPVEPVKPESVLDHVNRNEHEPEVSGSEKGEKQNDNDNDNDNDNDEDKDKGNVSESVISVSETKDSDSSFCISVKKGRANAKPKVASVKKPVLPKRKAADADADAGRGGGGGDDDGEEEEVTSSRSTISRRKDVKKHHLFTGKRRKLFWSAEEEKALKEGVSKFSTENQNIPWRKILEFGCRVFDSTRTPVDLKDKWRNLMKEGGKK 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02404 354 SUPERFAMILY Homeodomain-like 295 351 IPR009057 -
Trre6g02404 354 CDD SANT_TRF 296 349 - -
Trre6g02404 354 ProSiteProfiles Myb-like domain profile. 288 348 IPR001005 -
Trre6g02404 354 Gene3D - 296 354 - -
Trre6g02404 354 SMART sant 292 350 IPR001005 -
Trre6g02404 354 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 30 350 - -
Trre6g02404 354 Pfam Myb-like DNA-binding domain 296 347 IPR001005 -
Trre6g02404 354 SUPERFAMILY FYVE/PHD zinc finger 66 125 IPR011011 -
Trre6g02404 354 MobiDBLite consensus disorder prediction 154 184 - -
Trre6g02404 354 MobiDBLite consensus disorder prediction 227 282 - -
Trre6g02404 354 ProSitePatterns Zinc finger PHD-type signature. 71 115 IPR019786 -
Trre6g02404 354 MobiDBLite consensus disorder prediction 143 208 - -
Trre6g02404 354 MobiDBLite consensus disorder prediction 240 259 - -
Trre6g02404 354 CDD PHD_SF 70 115 - -
Trre6g02404 354 SMART PHD_3 70 116 IPR001965 -
Trre6g02404 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 149 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02404 Trre-Chr6 20966413 20969306 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02404 292 347 Single Myb Histone (SMH) Gene Family AT1G17520 45.763 9.60e-06 45.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre6g02404 Myb_DNA-binding 2.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02404 - - tpra:123911225 449.514