Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02403 ATGAAGAGGGCTATCTCGGTGGGATCTTTAGAGGGAAGAGTTGTGATAGAACTCGAAAACGCAAGCCTACTTACTCCTTCGTCATTTCCCATAAAAAATGTATCGTTCGAAGAAGATTCACCAATTGGTCATGAATGTGATAATTTCTCACTAGATGTTATAAAATTAAGAAGTAAGGTGCTAAGTAGCATAAAAGTTGTAGTCCTCTCAACTAAGATAAACTTACTCTTGCCTTTTGGTCCCATGGCAATTTTGGTAGATAAAATGTATGATAGTCATGGTTGGGTCTTTCTCTTCAGCTTATTAGGCATTATACCCTTGGCAGAGCGTTTGGGCTATACAACGGAGCAACTAGCTTTCTTTACTGGACCGGCAGTTGGTGGACTTTTATATGCGACATTTGGAAATGCAACCGAGTTAATTATATCAATTCACGCTCTCAAAAGCGGCTTGATTCGTCTTGTTCAACAATCACTACTAGGCTCAATTTTGTCTAACCTGTTGCTAGTACTTGGATGTGCATTCTTTGATGGTGGATTAGTATTTCATAAGAGAGAACAAGTATTTAACCATGCAGATGCTGGTGTGGATTTCGGATTATTATTGATGGCCGTAATGGGACTATTATTTCCAGCAGTTCTTCATGCTACACAAACAGAATTAGAATATGGGAAATCTCAGTTATCTCTTTCAAGATTTACTAGTTGCATTATGCTTGTTACATATGCTTCCTATATAGTGTTTCAAGTGAAGAATCTGAAGAATTTACAAGTTCCGGTTGATGAGGACAAGAGTTTCAATGAAGATACATCAAATGATGAAGAAGCTCCTGAGATTTCAATGTGGGAATCAATGATATGGATTTCAATCTTAACAGGAGGTATATCTATTCTGTCAGAATACTTGGTTAACACCATAGAGGGCGCATCGAAAGAGTTTGAAATGCCAGTGTCATTTCTTAGTGTTATTCTTCTTCCAGTAATTGGAAATGCTGCAGAACATGTTGGAGCTGTTATGTTTGCTGTGAAAGACAAACTTGACATATCGCTCGGCGTGGCTGTAGGATCTTCGATACAAATATCAATGTTTGTGATTCCATTTTGTGTGGTTGCTGGATGGATGATCGATTGCCCTATGGACTTGAATTTTCAGCCTTTCGAGACAACTTCACTTTTCATGTCAGTTATCATAGTCGCCTTCATGTTGCAAAATGGAACTTCAAACTACTTCAAAGGGATGGTGCTCATTCTTTGCTATTTGATAGTTTCTGCAAGTTTTTTTCAACACATTGATCCTATGTCAGTTGAAGATAATCCCTCAACTGCAGGTTAG 1332 0.3814 MKRAISVGSLEGRVVIELENASLLTPSSFPIKNVSFEEDSPIGHECDNFSLDVIKLRSKVLSSIKVVVLSTKINLLLPFGPMAILVDKMYDSHGWVFLFSLLGIIPLAERLGYTTEQLAFFTGPAVGGLLYATFGNATELIISIHALKSGLIRLVQQSLLGSILSNLLLVLGCAFFDGGLVFHKREQVFNHADAGVDFGLLLMAVMGLLFPAVLHATQTELEYGKSQLSLSRFTSCIMLVTYASYIVFQVKNLKNLQVPVDEDKSFNEDTSNDEEAPEISMWESMIWISILTGGISILSEYLVNTIEGASKEFEMPVSFLSVILLPVIGNAAEHVGAVMFAVKDKLDISLGVAVGSSIQISMFVIPFCVVAGWMIDCPMDLNFQPFETTSLFMSVIIVAFMLQNGTSNYFKGMVLILCYLIVSASFFQHIDPMSVEDNPSTAG 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02403 443 FunFam Vacuolar cation/proton exchanger 272 428 - -
Trre6g02403 443 Gene3D - 268 427 IPR044880 -
Trre6g02403 443 Gene3D - 124 267 IPR044880 -
Trre6g02403 443 FunFam Vacuolar cation/proton exchanger 124 263 - -
Trre6g02403 443 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 56 432 IPR004713 GO:0006812|GO:0008324|GO:0016020
Trre6g02403 443 Pfam Sodium/calcium exchanger protein 286 422 IPR004837 GO:0016020|GO:0055085
Trre6g02403 443 Pfam Sodium/calcium exchanger protein 95 250 IPR004837 GO:0016020|GO:0055085
Trre6g02403 443 NCBIfam calcium/proton exchanger 76 427 IPR004798 GO:0006816|GO:0015369
Trre6g02403 443 NCBIfam calcium/proton exchanger 60 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02403 Trre-Chr6 20952063 20955450 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02403 57 432 Antiporters AT1G55730 67.553 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02403 K07300 - jre:109000743 563.533