Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02388 ATGGCCAAACACACTCACTCACATACCAACAGCAACATCGACCCAAACACTGGTTACTGTTCACAATCTAGAACCTTCCACAGCCTCCGTCCAATCGTCCCTCTCCCTCCACCCTCTCAACCACTCTCTCTCACCAACTACGCACTCTCTCTCCTCCCCGAAACCGCCACCTCAAACAACACCTCTGCTCTCATAGACTCCGCCACCGACCACCACCTCACTTACCCCACTTTTCTCCGTCAAATCAAATCCCTCACTTCCTTCCTCCAACAATCCCGCACTCCTCTCTCCAAAGGCCACGTGGCATTAATCCTCACCCCTTCTTCCTTACACGTCCCCGTACTCTATTTCTCTCTCCTCTCCCTTGGCGTCACCATCGCACCTGCTAATCCACTCAGTTCCCAATCCGAGTTAACTCACTTGATTCAACTCACTAAACCCGTCATCGCATTCGCTACTTCCTTAACTGCTTCCAAAATCCCCAACCTCCCATTCGGCACAATCGTAATCGATTCTCCTTCTTTTCTTTCCATACTCGATTCCAACTCCAAATCCGAACCTCGCCGAGTCGAAATCAGTCAATCAGACACAGCGGCGATTCTCTTCTCTTCGGGAACAACTGGAAAAATGAAAGGCGTGTTGTTAACTCATCGTAACCTTATTGCGTTGATCGGAGGGTTTTGTTACCTGAAGCATGCGTATGATGACGGGGTTGTAGATGAACCGCATCCAGTGTCGCTGTTTCCTCTTCCTCTTTTTCATGTGTTTGGATTTTTTATGTTGGTGAGGGCTTTGGCTATGGGAGAGACATTGGTGTTGATGCAGAGGTTTGATTTTGAAGGGATGTTGAAGGCTGTGGAGAAGTATAGGATTACTTATATGCCGGTGTCGCCGCCGTTAGTTACGGCGTTTGCTAAGTCGGAGTTGGTGAAGAAATATGATCTTAGTTCGATTCGGTTGTTGGGGTCCGGTGGCGCGCCACTTGGTAAGGAAGTTGCGGAGAGCTTCAAAACCAAATTCCCCAATGTGGAAATTGTGCAGGGCTATGGTCTAACTGAAAGTGGAGGAGGGGCAGCAAGAATGATAGGGTTTGATGAGGCTAAGAAGTATGGTTCTGTGGGTCGATTAGCTGAAAATATGGAGGCCAAGATAGTTGACCCTGTTACAGGAGAGGCATTATCTCCCGGCCAGAAAGGGGAGCTTTGGTTGCGAGGACCAACAATCATGAAAGGTTATGTAGGAGACAACAAGGCGACTGTTGAGACATTGGATTCAGAGGGATGGCTGAAGACTGGCGATCTTTGTTATTTTGACTCTGATGGTTTTCTATACATTGTAGATAGACTGAAGGAATTGATCAAATACAAAGCTTATCAGGTTCCCCCAGCTGAATTAGAACACATACTTCATACAAATCCTGAAATTGCTGATGCTGCAGTAATTCCGTATCCTGATGAAGATGCAGGACAGATTCCAATGGCTTTTGTGGTAAGAAAGCCTGGAAGCAACATCACTGCCGCTCAGATCATGGAGTATGTGGCAAAGCAGGTAGCGCCATACAAGAAGATACGACGTGTTTCTTTTGTTAACTCTATTCCTAAATCTCCAGCTGGCAAAATTTTAAGAAGAGAATTAGTTGATATTGCTCTAACTAGTGGTTCATCCAAACTGTGA 1674 0.4665 MAKHTHSHTNSNIDPNTGYCSQSRTFHSLRPIVPLPPPSQPLSLTNYALSLLPETATSNNTSALIDSATDHHLTYPTFLRQIKSLTSFLQQSRTPLSKGHVALILTPSSLHVPVLYFSLLSLGVTIAPANPLSSQSELTHLIQLTKPVIAFATSLTASKIPNLPFGTIVIDSPSFLSILDSNSKSEPRRVEISQSDTAAILFSSGTTGKMKGVLLTHRNLIALIGGFCYLKHAYDDGVVDEPHPVSLFPLPLFHVFGFFMLVRALAMGETLVLMQRFDFEGMLKAVEKYRITYMPVSPPLVTAFAKSELVKKYDLSSIRLLGSGGAPLGKEVAESFKTKFPNVEIVQGYGLTESGGGAARMIGFDEAKKYGSVGRLAENMEAKIVDPVTGEALSPGQKGELWLRGPTIMKGYVGDNKATVETLDSEGWLKTGDLCYFDSDGFLYIVDRLKELIKYKAYQVPPAELEHILHTNPEIADAAVIPYPDEDAGQIPMAFVVRKPGSNITAAQIMEYVAKQVAPYKKIRRVSFVNSIPKSPAGKILRRELVDIALTSGSSKL 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02388 557 ProSitePatterns Putative AMP-binding domain signature. 200 211 IPR020845 -
Trre6g02388 557 CDD 4CL 61 545 - -
Trre6g02388 557 Gene3D - 451 551 IPR045851 -
Trre6g02388 557 Pfam AMP-binding enzyme C-terminal domain 464 539 IPR025110 -
Trre6g02388 557 Gene3D - 38 450 IPR042099 -
Trre6g02388 557 FunFam 4-coumarate--CoA ligase 2 451 552 - -
Trre6g02388 557 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 19 547 - -
Trre6g02388 557 SUPERFAMILY Acetyl-CoA synthetase-like 48 550 - -
Trre6g02388 557 Pfam AMP-binding enzyme 58 455 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02388 Trre-Chr6 20839683 20843358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02388 5 557 Monolignol Biosynthesis Gene Families AT5G63380 59.929 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02388 K01904 - gmx:100804044 863.603