Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02386 ATGGAGTTTCATGGCTTGGTTTTGCTATTTTGTTATGTTTGGCATCTCTTTTATGTTGGAAGTTGCAGTGCTCAGTTACAATCCTCTCAGACACAAGTTCTTCTCCAATTACAAAAACACTTAGAATATCCAACACAATTAGAAATATGGAAAGATCATAAATCAGAACTTTGCTTTATCTCTTCAACACAAGTCAAAATCACATGCAAGGACAATTTTGTTACTGAGCTAAGTATCTTTGGTGATAAACCGAAAAATGGTAGAGATTTTGATGGTTTTGCTATTCCAAATCAAACACTATCACAAAGCTTTTCAATGGATTCATTTGTTGCCACTCTAGCAAGGCTAACTAGCTTGAAAGTTCTTCATCTTGTTTCTTTGGGAATTTGGGGACCACTTCCAAATAGCATTCATAGACTATTTTCACTTGAATATTTGGATTTGAGTTCAAATTTTCTTTATGGATCAATCCCTCCAAAAATCTCTACTATGGTCAACCTTAAAACTCTTATGTTAGATGATAACTTCTTCAATGGTACCATCCCAAACTTGTTCAATTCATCAAATATTCTCACAGTTCTTAGTTTGAAGAATAATAAGTTGAAGGGTCCATTTCCATTTTCAATCCTTAGTATCACAACATTGACTATCATTGACATGTCAAGAAATCAAATATCAGGTAATTTGCAAGATTTTACTGGTTTGAGTATCTTGGAACAACTAGATTTAAGAGAAAATGAATTAGATTCCGATTTACCTGCTATGCCTAAAGAGTTGAAAACGCTTTTCCTCAACCGGAACTCCTTCTCAGGTCAAATTCCACAATACTATGGTCAATTAAGTAAGCTTGAGCAGCTTGATATTTCCTTCAATAAACTCACAGGAACTACTCCTTCTGCACTGTTTTCTTTGCCTAACATCAGTTACTTGAATTTAGGATCCAACAAGCTGAGTGGAACACTTCAAAATGACATAAAATGTGGCCATAGTCTTAGTTTTATTGATATATCAAACAATATGTTAGTTGGAGCCTTTCTTTCTTCTCTAAGCAATGTGTCAGAAAATAGAGTTGTTAAGAGTGATGGAAACTGTTTATCTGGGAGTTTGAAGCACCAGCATGCATTATCTTATTGCACAGAAGCTTATGATAAGACGAAGTCCCACCGAGTTGGATTTTTTGTCGGTGTCATTGTTGGCATTCTTGTTATTCTTGTGCTTTTGGGTTTATGTATTGTTGTTACTTGTAAAAGGTATTACTCTAAGGGGATTTCAGAACAGCACTTATTGCATAAATCAGTTCAAGATAGCTTCTCAGCAGGATTCTCATCCGAGCTTATTGCAAACGCGAGGTATGTTTCTGAAGCTGCAAAGTTAGGCAGAGAAGATCTTCCCCCATGCCGATCATATTCATTTGAAGAGCTTAAGGAAGCAACAAATAACTTTGACAATTCTACTTTTCTTGGTGAAAATATATATGGGAAGTTGTATAGAGGAAAATTAGAGAGTGGTATACCTGTTGTAATAAGGTGCATACCTTTGTCGAAGAAGTACTCTATTCGGAATTTCAAATTAAGGCTTGATTTGCTTGCAAAGCTCCGTCATGCACATTTGGTATCCCTCTTGGGTCATTGCATTGATGGCATTTTAGGAGAGCGTATCGACTCAAAAGTCTTTCTCATTTATGAATGCGTGTCAAATGGGAGTTTCCAAACTTATCTCTCAGGAGATAGTTCTGGAAAGATTTTCAATTGGCCAGAAAGATTGTCAGTTTTAATCAGTGTTGCTAAAGCTGTTCACTTCCTACACACTGGAATGATACCTGGTTTCTTCAAAAATAGACTTAAGACCAATAATATTTTGCTTAATGAAAATTGGATGGCAAAGTTGAGTGACTATGGATTATCCATTATCTCAGAAGAAACTGATGCAAGTGGGGTAAAAGGAGAAAGTCCTAATTCATGGCAAATGAAAAAGCTAGAGGATGATATTTATAGCTTTGGATTCATACTACTTGAGGCACTAGTTGGACCTTCAACTTCTGCTAAAAAAGAAGCAACTGTGCTAAATGCAATGGCTTCCTTCAATAGTCAAGATGACTGGAAACAAATAGTAGAGCCAGTTGTGCAAGCTACTTGTTGCAAAGAATCCCTATCAATTGTGGTTTCTATAACTAACAAGTGCATTTCGACCGAGTCGTGGAGTCGACCATCTATCGAGGAAGTCCTATGGAACTTGCAGTATGCTTCTCAGGTCCAGACAACAGCTGATGGGGATCACAGAATATGA 2286 0.3653 MEFHGLVLLFCYVWHLFYVGSCSAQLQSSQTQVLLQLQKHLEYPTQLEIWKDHKSELCFISSTQVKITCKDNFVTELSIFGDKPKNGRDFDGFAIPNQTLSQSFSMDSFVATLARLTSLKVLHLVSLGIWGPLPNSIHRLFSLEYLDLSSNFLYGSIPPKISTMVNLKTLMLDDNFFNGTIPNLFNSSNILTVLSLKNNKLKGPFPFSILSITTLTIIDMSRNQISGNLQDFTGLSILEQLDLRENELDSDLPAMPKELKTLFLNRNSFSGQIPQYYGQLSKLEQLDISFNKLTGTTPSALFSLPNISYLNLGSNKLSGTLQNDIKCGHSLSFIDISNNMLVGAFLSSLSNVSENRVVKSDGNCLSGSLKHQHALSYCTEAYDKTKSHRVGFFVGVIVGILVILVLLGLCIVVTCKRYYSKGISEQHLLHKSVQDSFSAGFSSELIANARYVSEAAKLGREDLPPCRSYSFEELKEATNNFDNSTFLGENIYGKLYRGKLESGIPVVIRCIPLSKKYSIRNFKLRLDLLAKLRHAHLVSLLGHCIDGILGERIDSKVFLIYECVSNGSFQTYLSGDSSGKIFNWPERLSVLISVAKAVHFLHTGMIPGFFKNRLKTNNILLNENWMAKLSDYGLSIISEETDASGVKGESPNSWQMKKLEDDIYSFGFILLEALVGPSTSAKKEATVLNAMASFNSQDDWKQIVEPVVQATCCKESLSIVVSITNKCISTESWSRPSIEEVLWNLQYASQVQTTADGDHRI 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02386 761 Gene3D Transferase(Phosphotransferase) domain 1 564 759 - -
Trre6g02386 761 Pfam Leucine rich repeat 258 317 IPR001611 GO:0005515
Trre6g02386 761 ProSiteProfiles Protein kinase domain profile. 481 748 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g02386 761 Pfam Protein tyrosine and serine/threonine kinase 486 743 IPR001245 GO:0004672|GO:0006468
Trre6g02386 761 Gene3D Ribonuclease Inhibitor 27 257 IPR032675 -
Trre6g02386 761 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 27 257 - -
Trre6g02386 761 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 259 383 - -
Trre6g02386 761 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 100 745 - -
Trre6g02386 761 Gene3D Phosphorylase Kinase; domain 1 446 562 - -
Trre6g02386 761 SUPERFAMILY L domain-like 112 373 - -
Trre6g02386 761 Gene3D Ribonuclease Inhibitor 258 386 IPR032675 -
Trre6g02386 761 SUPERFAMILY Protein kinase-like (PK-like) 464 746 IPR011009 -
Trre6g02386 761 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 564 761 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02386 Trre-Chr6 20800831 20804446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02386 6 693 Miscellaneous Gene Families AT5G14210 52.068 0.0 656
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Trre6g02386 PK_Tyr_Ser-Thr 1.3e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02386 - - gmx:100802978 1133.63