Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02381 ATGGCGGCTCTTACCTCTCTCCCTCCTTTTCCCCACACTCTCCTCTTCCTCCGCTCAAAATCAACCAGATTTTCCGTTTCAGCTTCAGCGCTCTCAGCCTCAGGAAATGATGGATCTAGTTCTAGAGCGTCTCATACAAGAAGGAGAAAAATCGAAGGTCCGCGAAAAAGTATGGAAGATTCTGTTCAACGTAAGATGGAGCAATTCTATGAAGGAAACGATGGGCCGCCTTTACGCGTTCTTCCTATTGGTGGTTTAGGTGAAATTGGAATGAATTGTATGCTTGTAGGGAATCATGACCGTTATATTCTCATCGATGCTGGTATCATGTTTCCTGACTATGATGACCTTGGAGTACAAAAGATTATACCTGATACAACATTTATAAGAAAATGGAGTCACAAAATTGAAGCGCTTGTTATAACGCATGGTCATGAAGATCATATTGGTGCGTTGCCTTGGGTCATCCCAGCATTGGATCCCAATACACCAATTTTTGCATCTTCCTTTACAATGGAGCTTATAAAAAAACGTTTGAAGGAGCATGGTATTTTTCTTACATCCAGACTCAAAATATTTAGAACAAAGAACAAGTTTGTGGCTGGGCCATTTGAGATAGAACCTATCAGGGTGACTCATTCTATTCCTGACTGTTGTGGATTGGTTCTTCGTTGTTCCGATGGTACCATTCTTCACACTGGGGATTGGAAGATTGACGAGACACCACTTGATGGGAAAGTTTTTGATCGAGAGGCTTTAGAGGAACTCTCTAAAGAAGGAGTAACATTGATGATGAGTGATTCAACAAATGTGCTCTCGCCTGGAAGGACAACAAGTGAATCTGTCGTGGCAGATTCATTATTGAGGCATATTTCAGCTTCTAAAGGAAGGGTTATTACAACTCAGTTTGCATCAAATCTACACAGGATTGGAAGTGTGAAAGCTGCTGCTGATTTAACTGGCAGAAAGTTGGTATTCGTTGGCATGTCTTTAAGGACATACTTAGAAGCAGCTTGGAAGGATGGAAAGGCTCCATTTGATCCATCCACTCTGGTGAAAGCAGAGGATATTGAGGCTTATGCACCTAAGGATCTGCTTATTGTAACAACAGGATCTCAAGCAGAGCCACGTGCTGCCTTAAATCTTGCATCTTACGGAAGTAGCCATGCTTTCAAACTAACCAAGGAAGATATCGTTTTGTATTCTGCCAAGGTTATCCCTGGTAATGAGTCTCGTGTGATGGAAATGATGAATCGCATATCAGAGATTGGATCAACAATAGTTATGGGGAACAATAAATTGTTGCACACATCTGGTCATGCATATCGTGGAGAATTGGAGGAAGTGCTTAGAATAGTGAAGCCGCAACATTTTCTTCCTGTACATGGAGAATACTTGTTCCTTAAGGAGCATGAGTCACTTGGAAAATCAACTGGCATTCATCATACTGCTGTTATTAAGAATGGAGAAATGCTTGGTGTTTCGCATTTGAGAAACAGAAAGGTTCTTTCTAATGGTTTCATTTCCCTTGGAAAAGAGAATTTACAGTTGAAATATAGCGACGGCGACAAAGCATTTGGTACATCCAGTGAACTCTGCATTGATGAAAGATTGAGAATTGCATTAGATGGCATCATTGTGATTAGCATGGAAATATCTCGCCCTAAAAATTTAGAAAGCTTGGCTGAAAACACCTTAAGAGGGAAGATAAGAATTACCACCAGATGCCTATGGCTCGACAAAGGGAAGCTATTAGATGCACTACATAAAGCTGCTCATGCAGCCCTTTCTAGCTGTCCCGTTAAAAGTCCACTGTCTCACATGGAAAGAACTGTGTCTGAGGTGTTGAGGAAGATGGTGAGGAAGTACAGTGGTAAACGGCCCGAAGTAATTGCCATTGCCACAGAAAATCCCGGAGCTGTTTTTGCTGATGAGATAAACAAAAAATTGTCTGGCAAATCCCACGTTGGTCCTGGAATACCAACATTAAGAAAAAAAGTGGATGAACAAAGAAAGGAAAACCAGTCCACCAAACTGCAAACAAGAGATGATGACATTGATATTGAAGGACTATTACCGGAGAAAGATACCACTACAAGTCGAGCTGAGGGTGATTTACCTGATTCAGAGGATTCAGTTGAATTTTGGAAACAATTCGTTGCATCATCAGTTGAGAAGTCAAACAAAGCTAACAATGGTTATGTTTCACGAAAGGAGTATAAGTCCAATGTGAAGAAAGATGATTCTGAAGACATCGATGAAGCCAAGTATGAAGAAAAGTCTAATGCTGAGCCAGAGTCTCCGAAATCAGTAAAGAAAAATAAATGGAAAGCTGAGGAAGTTAAGAAGCTGATTGATTTAAGGAGTGACCTCCGCGACAGATTTAAAGTTGTGAAGGGACGGATGGCTCTCTGGGAAGAGATATCTCAGAGCTTGTTGGCTGATGGGATCAGCAGAAGTCCTGGACAATGCAAATCTCTATGGACATCCTTGGTACAGAAATATGAGGACATTAAGAATGGGAAGGATACCAGAAAAAATTGGCAATATCTTGAGGACATGGAAAGGATATTGTCCGGTGACGAAGAACCTGCAACAAATTGA 2604 0.4121 MAALTSLPPFPHTLLFLRSKSTRFSVSASALSASGNDGSSSRASHTRRRKIEGPRKSMEDSVQRKMEQFYEGNDGPPLRVLPIGGLGEIGMNCMLVGNHDRYILIDAGIMFPDYDDLGVQKIIPDTTFIRKWSHKIEALVITHGHEDHIGALPWVIPALDPNTPIFASSFTMELIKKRLKEHGIFLTSRLKIFRTKNKFVAGPFEIEPIRVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTTSESVVADSLLRHISASKGRVITTQFASNLHRIGSVKAAADLTGRKLVFVGMSLRTYLEAAWKDGKAPFDPSTLVKAEDIEAYAPKDLLIVTTGSQAEPRAALNLASYGSSHAFKLTKEDIVLYSAKVIPGNESRVMEMMNRISEIGSTIVMGNNKLLHTSGHAYRGELEEVLRIVKPQHFLPVHGEYLFLKEHESLGKSTGIHHTAVIKNGEMLGVSHLRNRKVLSNGFISLGKENLQLKYSDGDKAFGTSSELCIDERLRIALDGIIVISMEISRPKNLESLAENTLRGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPVKSPLSHMERTVSEVLRKMVRKYSGKRPEVIAIATENPGAVFADEINKKLSGKSHVGPGIPTLRKKVDEQRKENQSTKLQTRDDDIDIEGLLPEKDTTTSRAEGDLPDSEDSVEFWKQFVASSVEKSNKANNGYVSRKEYKSNVKKDDSEDIDEAKYEEKSNAEPESPKSVKKNKWKAEEVKKLIDLRSDLRDRFKVVKGRMALWEEISQSLLADGISRSPGQCKSLWTSLVQKYEDIKNGKDTRKNWQYLEDMERILSGDEEPATN 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02381 867 MobiDBLite consensus disorder prediction 653 709 - -
Trre6g02381 867 SUPERFAMILY Metallo-hydrolase/oxidoreductase 78 492 IPR036866 -
Trre6g02381 867 MobiDBLite consensus disorder prediction 662 709 - -
Trre6g02381 867 CDD RNaseJ_MBL-fold 81 492 - -
Trre6g02381 867 Gene3D - 776 836 - -
Trre6g02381 867 Gene3D - 530 636 - -
Trre6g02381 867 ProSiteProfiles Myb-like domain profile. 768 832 IPR001005 -
Trre6g02381 867 MobiDBLite consensus disorder prediction 42 63 - -
Trre6g02381 867 Pfam Beta-lactamase superfamily domain 101 237 IPR001279 -
Trre6g02381 867 MobiDBLite consensus disorder prediction 740 775 - -
Trre6g02381 867 Gene3D - 279 429 IPR042173 -
Trre6g02381 867 CDD GT1 774 839 - -
Trre6g02381 867 PANTHER RIBONUCLEASE J 1 866 - -
Trre6g02381 867 MobiDBLite consensus disorder prediction 30 63 - -
Trre6g02381 867 SMART sant 772 834 IPR001005 -
Trre6g02381 867 Gene3D - 82 494 IPR036866 -
Trre6g02381 867 SMART Lactamase_B_5a 90 287 IPR001279 -
Trre6g02381 867 Pfam Myb/SANT-like DNA-binding domain 774 857 IPR044822 -
Trre6g02381 867 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 431 481 IPR011108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02381 Trre-Chr6 20774911 20786093 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02381 775 859 Trihelix Transcription Factor Family AT2G38250 32.184 7.51e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre6g02381 Lactamase_B_2 8.5e-10 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02381 - - gmx:100783850 1380.93