Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02376 ATGGTTTCAACGAGACGCAACAGTGGTGGATCTTTCCCTTCTAACAACAACAACAACAATAACTCTAAAAGACCTTCGTCATCTTCCGATGACAAACCTCCTTCTTCTCCTTCTCCTAAGCGCCAAAAGTCTGACAATGGTGCTGCTGCTGCTGAGAAACCGATTTCTCCGGCGGAGAATTCCAAGGATTTGTCTACTCCTGACCCTCCCGCCGATCCCGGAGAATGTCGTAACGCCGATGCTCAGATCGATGAACCGGAAGTAGCTGCTGATGATAAAACCGATGCTACTCCGCCGATCGCTGACGGTTCTTCGCCGACTCTGGTAGCCGATAAACCTAGGGCTTCGTTTTCTTCATGGAGTATATATCAGAAGCAAAACCCCAACCTTGAGTCTTCAGCTCCATGGTGTCGGCTTCTGTCTCAGTCTGCACAGCATCCAAATGTTTCAATTTGCACACCCAACTTTACTATTGGCTCTAGCAGAAATTGCAACTTTCATTTGAAGGATCATACTATAAGTGGAAATTTATGCAAGATCAAACATACACAGCGTGAGGGACTTGATGCGGCTGTGCTAGAAAGTACGGGTAGCAAAGGATCTGTGCTAGTTAATGGGACACTTGTCAAGAAGAATAACTGCTGCACGCTTCTCTCGGGCGATGAGGTGGTTTTTGGCTTGCATGGAAATCATTCTTATATTTTTCAGCAAGTAAACACCGAGGTTGCGGTTAAGGGTGCAGAAGTTCAGAGTGGTGTTGGTAAATTTATGCAACTTGAAAGGAGAAGTGGAGACCCTTCAGCCGTGGCTGGGGCTTCTATCTTAGCTTCTCTTTCTAATCTCAGGCAGGATCTTACAAGATGGAAGTCTCCATCTCAGACTGCCAGTAAACCTCACCAGGCTGCTGATGTTTCTATTCATACTGTTCTACCTGATGGCACAGAAATTGAGCTTGATGGCCTGGAAGGAAACTCAACTCCAAATATAGGAACTGATAAAGCTGCTGATGCTGAGGCTAGCAACAAGAACTCTCCTATGGAATGCGATCCAGAGGATGCGGGCGCAGAGCCAGGCAATGTAAAATTCTCTGGGGTGAATGATTTGCTAAGGCCTTTCTTCAGGATTCTAGCTGGATCTACTACTTGTAAACTGAAATTGAGCCAAAGTATCTGTAAACAGGTATTGGAAGAAAGAAATGGGGAGGAGGACACACAAGCTGCATCGACTTCGGGTACATCTGTACGCTGTTCAGTTTTTAAAGAAGATGCTCATGCTGCAATACTGGATGAAAAAGAACTAGAAGTGTCCTTTGACAACTTCCCATACTATTTAAGTGAGAATACAAAAAATGTCCTGATTGCAGCTTGCTTTATACACCTGAAGCATAAAGAACATGCAAAGTACACCACAGATCTTCCCACCGTAAATCCTCGTATTCTACTTTCAGGACCTGCAGGGTCAGAAATATATCAGGAGATGCTTGTAAAAGCACTTGCGAAATACTTTGGTGCTAAATTGCTCATATTTGATAGCCAGTCGCTTTTGGGTGGTTTATCTTCTAAGGAAGCTGAACTGCTCAAAGATGGATTTAATGCTGAGAAATCTTGCAGTCCTACAGCCACAGACACGGCTAAGAGCATGGATCCACCAGCTAGTGAAACAGATACACCTAGCACTTCAAATGCACCTACTCCACTTGGCCTTGAACCTCAAGCTAAGTTGGATACTGATAGTGTACCGTCAACGTCTGGGACAGCTAAAAATTGCTTGTTTAAACTGGGCGACCGGGTTAAGTATAGTTCATCTTCTGGTTGTTTGTATCAGACATCTTCTTCAAGGGGTCCATCTAATGGAAGTCGAGGGAAGGTTGTCTTAATTTTCGATGATAATCCATTGTCAAAAATTGGTGTAAGATTTGATAAACCTATACCTGATGGGGTTGATCTTGGAGGTGCCTGTGAGGGGGGCCAGGGATTTTTCTGCAACGTCACTGATCTTCGATTGGAAAACAGTGGCATTGACGAACTCGACAAATTACTTATTAATACGTTGTTTGAGGTTGTAACTAGTGAGAGTAGAAACTCACCTTTCATTTTGTTCATGAAAGAAGCAGAAAAGGCTATAGTAGGAAATGGAGATCCATATTCATTTAAAATGAAGCTTGAAATGCTTCCCGACAATGTGGTGGTAATAGGTTCACACACTAACACCGACAGTCGAAAGGAGAAGTCACATCCTGGGGGTTTGCTTTTTACAAAGTTTGGCAGCAATCAGACTGCCCTCCTTGACTTGGCTTTCCCGGATAGTTTCGGAAGATTACATGATAGGGGAAAAGAAGTCCCAAAACCAAACAAAACTTTGACCAAGTTATTTCCAAATAAAGTAACAATTCACATGCCACAGGATGAGGCACTTCTAGCATCATGGAAACAGCAACTTGATCGAGACGTGGAGACTCTTAAAGTCAAAGGAAATTTGCACCATTTGCGCACCGTTTTAAGCCGTAGTGGGATGGAATGTGAAGGACTCGAGGACTTGTGTGTCAAGGATCTGACACTTACAAATGAAAATTCAGAGAAGATTGTTGGTTGGGCTTTAAGCCACCATCTGATGCAGAATTCTGAAGTTGATGCTGATGCAAAGCTTGTGCTGTCTTGTGAGAGCCTCCAGTATGGAATTGGGATCTTACAGGCTATCCAGAATGAGTCGAAGAGCCTAAAGAAGTCTCTTAAGGACGTTGTAACAGAAAACGAGTTTGAAAAGAGGCTTTTGGGTGATGTTATTCCACCTAGCGACATCGGTGTTACTTTTGATGATATTGGAGCTCTTGAAAATGTTAAGGATACATTGAAGGAATTGGTGATGCTTCCTTTACAGAGGCCAGAGCTTTTTTGCAAGGGGCAGTTAACCAAGCCATGCAAGGGCATTCTATTATTTGGTCCACCGGGAACAGGTAAGACAATGCTTGCCAAGGCAGTTGCTACCGACGCTGGTGCAAACTTCATCAATATTTCCATGTCAAGCATCACATCTAAGTGGTTTGGTGAGGGTGAAAAATATGTCAAAGCTGTTTTCTCCCTGGCAAGTAAAATTGCTCCCAGTGTGATATTTGTTGATGAAGTTGATAGCATGTTGGGCCGGAGGGAAAATCCAGGGGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAACTGGGATGGCTTACGTACAAAGGATACTGAACGTGTTCTTGTGCTCGCCGCCACCAATAGACCTTATGACCTTGATGAGGCTGTCATACGAAGGCTGCCTCGGAGATTAATGGTAAATTTACCAGATGCTCCAAATAGAGCAAAAATATTGAAAGTTATACTGGCAAAAGAGGACCTGTCTTCTGATGTTGATCTGAGTGCAGTTGCAAGTATGACTGACGGATATTCTGGAAGTGATCTTAAGAACTTATGTGTAACCGCTGCACACCGTCCTATTAAAGAGATACTAGAAAAGGAAAAAAAGGAACTTGCTGCTGCTCTAGCAGAAGGTAGACCTGCACCTGCATTACGTGGAAGTGATGATATCCGATCTTTAAACATGGAAGACTTTAAACATGCTCACCAACAGGTATGTGCAAGTGTTTCCTCTGAATCCGTAAATATGACAGAGCTTGTACAATGGAATGAACTCTACGGTGAAGGTGGTTCAAGAGTTAAAAAAGCACTAAGCTATTTCATGTGA 3723 0.4341 MVSTRRNSGGSFPSNNNNNNNSKRPSSSSDDKPPSSPSPKRQKSDNGAAAAEKPISPAENSKDLSTPDPPADPGECRNADAQIDEPEVAADDKTDATPPIADGSSPTLVADKPRASFSSWSIYQKQNPNLESSAPWCRLLSQSAQHPNVSICTPNFTIGSSRNCNFHLKDHTISGNLCKIKHTQREGLDAAVLESTGSKGSVLVNGTLVKKNNCCTLLSGDEVVFGLHGNHSYIFQQVNTEVAVKGAEVQSGVGKFMQLERRSGDPSAVAGASILASLSNLRQDLTRWKSPSQTASKPHQAADVSIHTVLPDGTEIELDGLEGNSTPNIGTDKAADAEASNKNSPMECDPEDAGAEPGNVKFSGVNDLLRPFFRILAGSTTCKLKLSQSICKQVLEERNGEEDTQAASTSGTSVRCSVFKEDAHAAILDEKELEVSFDNFPYYLSENTKNVLIAACFIHLKHKEHAKYTTDLPTVNPRILLSGPAGSEIYQEMLVKALAKYFGAKLLIFDSQSLLGGLSSKEAELLKDGFNAEKSCSPTATDTAKSMDPPASETDTPSTSNAPTPLGLEPQAKLDTDSVPSTSGTAKNCLFKLGDRVKYSSSSGCLYQTSSSRGPSNGSRGKVVLIFDDNPLSKIGVRFDKPIPDGVDLGGACEGGQGFFCNVTDLRLENSGIDELDKLLINTLFEVVTSESRNSPFILFMKEAEKAIVGNGDPYSFKMKLEMLPDNVVVIGSHTNTDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKPNKTLTKLFPNKVTIHMPQDEALLASWKQQLDRDVETLKVKGNLHHLRTVLSRSGMECEGLEDLCVKDLTLTNENSEKIVGWALSHHLMQNSEVDADAKLVLSCESLQYGIGILQAIQNESKSLKKSLKDVVTENEFEKRLLGDVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATDAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPYDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSSDVDLSAVASMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKELAAALAEGRPAPALRGSDDIRSLNMEDFKHAHQQVCASVSSESVNMTELVQWNELYGEGGSRVKKALSYFM 1240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02376 1240 Pfam FHA domain 157 226 IPR000253 GO:0005515
Trre6g02376 1240 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 419 1239 - -
Trre6g02376 1240 Gene3D - 135 244 - -
Trre6g02376 1240 Gene3D - 934 1215 IPR027417 -
Trre6g02376 1240 SUPERFAMILY SMAD/FHA domain 116 236 IPR008984 GO:0005515
Trre6g02376 1240 MobiDBLite consensus disorder prediction 535 566 - -
Trre6g02376 1240 MobiDBLite consensus disorder prediction 319 359 - -
Trre6g02376 1240 MobiDBLite consensus disorder prediction 78 92 - -
Trre6g02376 1240 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 935 1215 IPR027417 -
Trre6g02376 1240 ProSitePatterns AAA-protein family signature. 1079 1098 IPR003960 GO:0005524|GO:0016887
Trre6g02376 1240 Coils Coil 896 916 - -
Trre6g02376 1240 Pfam AAA+ lid domain 1129 1164 IPR041569 -
Trre6g02376 1240 MobiDBLite consensus disorder prediction 1 43 - -
Trre6g02376 1240 MobiDBLite consensus disorder prediction 1 112 - -
Trre6g02376 1240 Pfam ATPase family associated with various cellular activities (AAA) 976 1105 IPR003959 GO:0005524|GO:0016887
Trre6g02376 1240 SMART AAA_5 972 1109 IPR003593 GO:0016887
Trre6g02376 1240 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 934 1110 - -
Trre6g02376 1240 MobiDBLite consensus disorder prediction 535 582 - -
Trre6g02376 1240 Gene3D - 1108 1202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02376 Trre-Chr6 20737670 20749123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02376 935 1183 Calmodulin-binding Proteins AT3G56690 40.625 1.43e-42 167