Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02359 ATGTTGTTAGAAGTTCCGCGGATGCACATGGATGGTTTGGTTGAATCTCAAGAAGAGAATGACTATAGAGAGGGAACAAGACTAGAAGCTGATGAAGGTATGAACCATGTTTTGTCAGAAAGAAGGAGAAGAGCAAAACTTAATGAAAGGTTTTTAACTCTTAGATCAATGGTCCCTTCAAATAGTAAGGATGACAAAGTTTCTATACTAGATGATGCAATTGAATATCTTAGCAAGCTTGAGAAAAGGATAAAAGAGTTAGAAGCTCAAAAAGAACCAATAGATATAGAGTCTAGAAGTAAAAAATCACATCATGATTTGTTGGAGAGGACTTGTGATGATTATTATAACAACAAAACTAACAATGGCAAGAAACCAATGATGAAGAAGAGGAAAATATGTGACATAAGTGAGACAAGGAGGCAGATATTTTCCGATGCTTTAAAAGGAAGTTCTAATAGTGATGTTACTGTCAGTATGAGTGACAATGGAGTTGTGATTGAAATGAAGTGTCCTTCTAGAGAAGGAAGGATATTGGAAATTATGGATGCAGTTAACAATCTCAACATGGATTTTAATTCAGTTCAATCTACAGATTCTGATGGGAGGCTTCATGTGATCATTAGATCTAAGTTCAAAGGACCAGCTAATGCAACAACAAAAAGGATCAAACAAGCCCTACAAAAAGTGGCTTCAAAGTTTTGA 705 0.3532 MLLEVPRMHMDGLVESQEENDYREGTRLEADEGMNHVLSERRRRAKLNERFLTLRSMVPSNSKDDKVSILDDAIEYLSKLEKRIKELEAQKEPIDIESRSKKSHHDLLERTCDDYYNNKTNNGKKPMMKKRKICDISETRRQIFSDALKGSSNSDVTVSMSDNGVVIEMKCPSREGRILEIMDAVNNLNMDFNSVQSTDSDGRLHVIIRSKFKGPANATTKRIKQALQKVASKF 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02359 234 Gene3D - 29 92 IPR036638 GO:0046983
Trre6g02359 234 Pfam Helix-loop-helix DNA-binding domain 35 81 IPR011598 GO:0046983
Trre6g02359 234 PANTHER TRANSCRIPTION FACTOR TT8 1 232 - -
Trre6g02359 234 Coils Coil 70 97 - -
Trre6g02359 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 31 80 IPR011598 GO:0046983
Trre6g02359 234 SMART finulus 37 86 IPR011598 GO:0046983
Trre6g02359 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 34 96 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02359 Trre-Chr6 20548829 20549885 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02359 1 231 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 40.756 1.13e-45 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre6g02359 HLH 5.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02359 - - mtr:25502049 404.831