Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02358 ATGAACCATTGTTTCAAGGTTCAAAGGAAACATGAACTAGTACAAGGAAACGCACAAAAGCTATTGAAGAAAATGTTGTTAGAAGTTCCGCGGATGCACATGGATGGTTTGGTTGAATCTCAAGAAGAGAATGACTATAGAGAGGGAACAAGACTAGAAGCTGATGAAGGTATGAACCATGTTTTGTCAGAAAGAAGGAGAAGAGCAAAACTTAATGAAAGGTTTTTAACTCTTAGATCAATGGTCCCTTCAAATAGTAAGGATGACAAAGTTTCTATACTAGATGATGCAATTGAATATCTTAGCAAGCTTGAGAAAAGGATAAAAGAGTTAGAAGCTCAAAAAGAACCAATAGATATAGAGTCTAGAAGTAAAAAATCACATCATGATTTGTTGGAGAGGACTTGTGATGATTATTATAACAACAAAACTAACAATGGCAAGAAACCAATGATGAAGAAGAGGAAAATATGTGACATAAGTGAGACAAGGAGGCAGATATTTTCCGATGCTTTAAAAGGAAGTTCTAATAGTGATGTTACTGTCAGTATGAGTGACAATGGAGTTGTGATTGAAATGAAGTGTCCTTCTAGAGAAGGAAGGATATTGGAAATTATGGATGCAGTTAACAATCTCAACATGGATTTTAATTCAGTTCAATCTACAGATTCTGATGGGAGGCTTCATGTGATCATTAGATCTAAGTTCAAAGGACCAGCTAATGCAACAACAAAAAGGATCAAACAAGCCCTACAAAAAGTGGCTTCAAAGTTTTGA 777 0.3526 MNHCFKVQRKHELVQGNAQKLLKKMLLEVPRMHMDGLVESQEENDYREGTRLEADEGMNHVLSERRRRAKLNERFLTLRSMVPSNSKDDKVSILDDAIEYLSKLEKRIKELEAQKEPIDIESRSKKSHHDLLERTCDDYYNNKTNNGKKPMMKKRKICDISETRRQIFSDALKGSSNSDVTVSMSDNGVVIEMKCPSREGRILEIMDAVNNLNMDFNSVQSTDSDGRLHVIIRSKFKGPANATTKRIKQALQKVASKF 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02358 258 Gene3D - 53 116 IPR036638 GO:0046983
Trre6g02358 258 Coils Coil 94 121 - -
Trre6g02358 258 SMART finulus 61 110 IPR011598 GO:0046983
Trre6g02358 258 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 58 120 IPR036638 GO:0046983
Trre6g02358 258 Pfam Helix-loop-helix DNA-binding domain 59 105 IPR011598 GO:0046983
Trre6g02358 258 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 55 104 IPR011598 GO:0046983
Trre6g02358 258 PANTHER TRANSCRIPTION FACTOR TT8 9 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02358 Trre-Chr6 20548829 20549957 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02358 14 255 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 40.964 1.50e-48 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre6g02358 HLH 6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02358 - - mtr:25502049 420.239