Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02326 ATGGCAGCTATGATGGATTTTTACAGTAGTAACTCACAGTTTCACAGCTCAGATCCATTTAGAGGTGAATTAATGGAAGTTCTTGAACCTTTTATCAATAGTCCTTCCTCAAATTCAAACTCAAATTCAAAATCAAATTCAAATTCAATTTCAATCTCAAACTCAACACAATCACCTTCTTATTCTTCTCCTTTTCTACCTTCTTTTTCTTCTCTTCCTCCTTTTTACACAGATGATTGTTATAGCCAAAACTACTTTTTTGGCTTTTCTCAACCATCTTCTACTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTTCTTGGTCTTAACCACTTAACACCATCACAAATCAACCAGATCCAAGCACAAATTCAACAACAAAACTTTACCATGCAACAACAACAACAACAACAGCAACAACGTCTTAGTAATACTCTGAGTTTTCTAAGTCCAAAACCGATCCCTATGAAGCTTGTGGGAAATAATCCATCAAAACCCACGAAGCTATACAGAGGTGTGAGGCAAAGACACTGGGGAAAATGGGTTGCTGAGATAAGATTACCAAAGAATCGTACTAGGCTTTGGCTTGGTACTTTTGATACAGCTGAAGAAGCTGCTTTAGCTTATGATAAAGCTGCTTATAAACTTCGTGGTGACTTTGCTAGGCTTAATTTCCCAAATCTTAAACACCAAGGTTCTTCTATTGGTGGTGAATTTGGTGAGTTTAAGCCTCTTCCTTCTTCTGTTGATGCTAAACTTCAAGCTATTTGTGAAGGTTTAGCTGAGATGCAGAAACAGGGAAAGACAGAGAAACCTAAGAAAACACCGGCAGCTCGGTCGAAAGCTAAGGCGGCGGTAGCAGCGGCTTCGTCGGAGACGGTGACTGTGTCTGTGGTTGAGGATTCTGTTGTTGATTTGAAGAAGGATTCAGAGAGTTGTTGTAAGGTTGAAGTTTCATCTTCTCCGGTGAGTGAAGGTGGTTGTTCTGAAGGATCTTCACCACTTTCGGATCTTACTTTTGGTGATGTTGGTGAGACACAGTGGGAGGGTGATTTAGATAATTTTAATTTGCTAAAATACCCTTCTTATGAGATTGATTGGGATAATCTGTGA 1110 0.391 MAAMMDFYSSNSQFHSSDPFRGELMEVLEPFINSPSSNSNSNSKSNSNSISISNSTQSPSYSSPFLPSFSSLPPFYTDDCYSQNYFFGFSQPSSTSSSSSSSSSLLGLNHLTPSQINQIQAQIQQQNFTMQQQQQQQQQRLSNTLSFLSPKPIPMKLVGNNPSKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLKHQGSSIGGEFGEFKPLPSSVDAKLQAICEGLAEMQKQGKTEKPKKTPAARSKAKAAVAAASSETVTVSVVEDSVVDLKKDSESCCKVEVSSSPVSEGGCSEGSSPLSDLTFGDVGETQWEGDLDNFNLLKYPSYEIDWDNL 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02326 369 SUPERFAMILY DNA-binding domain 168 225 IPR016177 GO:0003677
Trre6g02326 369 Pfam AP2 domain 169 217 IPR001471 GO:0003700|GO:0006355
Trre6g02326 369 CDD AP2 167 227 IPR001471 GO:0003700|GO:0006355
Trre6g02326 369 Gene3D AP2/ERF domain 168 226 IPR036955 GO:0003700|GO:0006355
Trre6g02326 369 SMART rav1_2 168 231 IPR001471 GO:0003700|GO:0006355
Trre6g02326 369 MobiDBLite consensus disorder prediction 34 60 - -
Trre6g02326 369 Coils Coil 116 136 - -
Trre6g02326 369 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 369 - -
Trre6g02326 369 FunFam Ethylene-responsive transcription factor 2 167 226 - -
Trre6g02326 369 PRINTS Ethylene responsive element binding protein signature 169 180 IPR001471 GO:0003700|GO:0006355
Trre6g02326 369 PRINTS Ethylene responsive element binding protein signature 191 207 IPR001471 GO:0003700|GO:0006355
Trre6g02326 369 ProSiteProfiles AP2/ERF domain profile. 168 225 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02326 Trre-Chr6 20145293 20146402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02326 1 369 AP2-EREBP Transcription Factor Family AT1G78080 48.031 3.38e-94 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre6g02326 AP2 8.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02326 K09286 - gmx:100800478 331.257