Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02313 ATGACTTCATTTCCTTCTGATTCTTTCAATATGAGAGTCACAGAAGATGGAAATCTTCATCTTGAAGATACAGAGAGATCACAGTGGATACTAAACTCTCCAACTCCACCACCTCTATGGAAAAAGCTTATTACTCCACTCAAGAATAATAAGCTTTTTTCTTCATCCAAGAACAAAAAAACTTGCCATGAAAATGCTTTTTCTTTCTTTAGTAGTTTATTTCCAATCCTTGGTTTGTTCAAAAACTATGATGCTTTCAAGTTTAAAGATGATTTTCTAGCTGGTTTAACTCTTGCTAGCTTAAGCATACCTCAGAGTATAGGATATGCTAATTTAGCAAAACTTGATCCTCAATATGGCTTATACACAAGTGTGGTTCCTCCTCTTATCTATGCTGTGATGGGAAGCTCAAGAGAAATTGCAATTGGACCTGTAGCTGTAGTGTCACTATTGCTATCAACTCTTTGTCACAAAGTGGTTGATCCAGAATTAAATCATGATGATTACAGAAATTTTGTCTTTACTGTAACATTATTTGCTGGAATCTTTCAAGTTGCATTTGGCGTTTTCAGGTTGGGATTTCTTGTGGATTTTCTGTCACATGCTGCACTTGTTGGATTCATGGCAGGTGCAGCCATCATGATTGGTCTTCAACAGCTTAAAGGGTTGCTTGGGATTAGTAACTTTACTAATAAATCTGATGTTGTTTCTGTTTTGGAATCTGTTTACAAATCACTTCGTCACCAAATTCCATCTGGAGAATGGTACCCTCTGAATTTTGTCATTGGATGTTCATTCCTGATTTTCCTTTTGATTGCAAGATTTATGGGTAAAAGAAACAAAAAGCTATTCTGGTTGCCAGCTATTGCTCCTCTTGTATCAGTTATATTATCAACTTTTATTGTGTATATATCCAAAGCTGATAAGAATGGGGTTAATATAGTAAAACATGTCAAAAGAGGCCTTAATCCAAGTTCAATTCATCAATTACAACTCAATGGTGAACATGTTGGACAAGCTGCTAAAATTGGATTCATTTCTGCTGTTATTGCTCTCACTGAAGCAATGGCTGTTGGTAGATCTTTTGCTTCAATTAAAGGATACCATCTTGATGGAAACAAAGAAATGTTAGCAATGGGTTGTGGGAACATTGCAGGATCTTTCACTTCATGCTATGTTGCAACTGGTTCATTTTCAAGGACTGCAGTAAATTTCAGTGCAAGATGTCAATCATCAATATCAAACATTGTGATGGCAGTGACAGTAATTCTGTGCTTGGAATTGTTTACAAGACTGTTATATTACACACCTATGGCTATACTTGCTTCTATAATCCTCTCTGCTCTTCCTGGATTAATTGACATTAGAGAAGCTTGTTATATATGGAAGGTTGACAAGTTTGACTTTCTTGCTTGCATTGGTGCTTTCTTTGGTGTCTTGTTTGTATCTGTAGAAACTGGTCTTCTTGTGGCTGTATCAATTTCGTTTTTAAAGATAGTAATACAATCAATTCGACCTGGAATAGAAGTTCTAGGTAGAATTCCAACAACACAAGCCTTTTGTGATGTTACTCAATATCCCATGGCTACAAGCTCTCCAGGCATTTTGGTCATTCGTATAAGCTCTGGCTCACTCTGCTTTGCAAATGCTAATGTTGTTAGAGAAAGAATACTCAAGTGGGTCACTGAAGAAAATGGACTTAAAGAAACTACTATAGGAAATGTCCAAGCAATAATATTGGACATGACTAATTTGATGAATGTTGATACTTCTGGAATTATAGTACTAGAGGAATTGCACAAGAGGTTACTCTCTCGTGGCATAAAATTTGCTATGGTGAATCCAAGGTGGCAAGTAATTCACAAGCTTAAAGTGGCACACTTTGTAGATAAAGTTGGGAAAGAATGGGTTTTCTTTACAGTTGCTGAAGCTGTGGATGCATGTTTATCTTATAAATTTGCTAATCCATAA 1971 0.3612 MTSFPSDSFNMRVTEDGNLHLEDTERSQWILNSPTPPPLWKKLITPLKNNKLFSSSKNKKTCHENAFSFFSSLFPILGLFKNYDAFKFKDDFLAGLTLASLSIPQSIGYANLAKLDPQYGLYTSVVPPLIYAVMGSSREIAIGPVAVVSLLLSTLCHKVVDPELNHDDYRNFVFTVTLFAGIFQVAFGVFRLGFLVDFLSHAALVGFMAGAAIMIGLQQLKGLLGISNFTNKSDVVSVLESVYKSLRHQIPSGEWYPLNFVIGCSFLIFLLIARFMGKRNKKLFWLPAIAPLVSVILSTFIVYISKADKNGVNIVKHVKRGLNPSSIHQLQLNGEHVGQAAKIGFISAVIALTEAMAVGRSFASIKGYHLDGNKEMLAMGCGNIAGSFTSCYVATGSFSRTAVNFSARCQSSISNIVMAVTVILCLELFTRLLYYTPMAILASIILSALPGLIDIREACYIWKVDKFDFLACIGAFFGVLFVSVETGLLVAVSISFLKIVIQSIRPGIEVLGRIPTTQAFCDVTQYPMATSSPGILVIRISSGSLCFANANVVRERILKWVTEENGLKETTIGNVQAIILDMTNLMNVDTSGIIVLEELHKRLLSRGIKFAMVNPRWQVIHKLKVAHFVDKVGKEWVFFTVAEAVDACLSYKFANP 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02313 656 Pfam Sulfate permease family 88 473 IPR011547 GO:0016020
Trre6g02313 656 SUPERFAMILY SpoIIaa-like 531 648 IPR036513 -
Trre6g02313 656 ProSitePatterns SLC26A transporters signature. 117 138 IPR018045 GO:0008271|GO:0008272
Trre6g02313 656 NCBIfam sulfate permease 75 644 IPR001902 GO:0016020|GO:0055085
Trre6g02313 656 PANTHER SULFATE TRANSPORTER 55 648 IPR001902 GO:0016020|GO:0055085
Trre6g02313 656 ProSiteProfiles STAS domain profile. 542 648 IPR002645 -
Trre6g02313 656 FunFam Sulfate transporter 31 505 651 - -
Trre6g02313 656 Gene3D STAS domain 505 650 IPR036513 -
Trre6g02313 656 CDD STAS_SulP_like_sulfate_transporter 526 641 - -
Trre6g02313 656 Pfam STAS domain 526 644 IPR002645 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02313 Trre-Chr6 19902425 19907684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02313 22 652 Inorganic Solute Cotransporters AT5G10180 61.285 0.0 795
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02313 K17469 - gmx:100805269 1030.01