Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02304 ATGTCGTCTCCGTGTGCAGCGTGCAAGAATCAGCGAAGAAAATGCACAAAAGAATGCATTTTCGCACCTTATTTTCCGCCGGATAATCCTCAAAAATTTGCTTATGTACAAAAAGTCTTTGGTGCTAGTAACGTTGCAAAGCTACTCAATGAGCTTCAGAATCAACTCAGAAATTTGCAAAATGAACTTGTTATGGCAAAGAAAGAACTTGCTTCTCTTCATGCTATAGTTCCTCTACCACCACAGCCGCCGCTGACTCCACCGGCGGCGACCGGAAGTTCTTATTTTTCGTTCAGTTCTTCTTCTGCTCAACAGAAACATGAGGTTTTCAACTTCGAAGATGTTGAAGGAAGAAAAAGAGAATCTTTGATTAGGCTTAATTCTTACCAATCTGACACAAACAGGTGCAAAGAACAAATTTTGCAGTATAAGAAAGGAAGCTGA 444 0.4054 MSSPCAACKNQRRKCTKECIFAPYFPPDNPQKFAYVQKVFGASNVAKLLNELQNQLRNLQNELVMAKKELASLHAIVPLPPQPPLTPPAATGSSYFSFSSSSAQQKHEVFNFEDVEGRKRESLIRLNSYQSDTNRCKEQILQYKKGS 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02304 147 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Trre6g02304 147 Pfam Lateral organ boundaries (LOB) domain 4 58 IPR004883 -
Trre6g02304 147 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 57 - -
Trre6g02304 147 Coils Coil 42 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02304 Trre-Chr6 19868606 19869759 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02304 2 83 AS2 family AT5G66870 47.244 4.16e-27 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre6g02304 LOB 7.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02304 - - mtr:25489402 115.161