Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02293 ATGGATATATACGAGCCATTCCAGCATGTTAGCATGTGGGGTGACAGCTTTAAAGTTGAAGGTGGGTTGAATTCAATTGCTTCACCAATGTTATTGGTCAACACTACTACTAGCATGGAGAACAAGTCTGAATATATTCCTCATGAAACAAATGAGCCTTCTGAAGTCAATCAAGAGACTACAAATAAAGATGTTAGTAAGGTTCTACGACGCCTTGCTCAAAATCGAGAGGCTGCTCGGAAAAGTCGATTGCGCAAAAAGGCTTATGTTCAACAATTAGAAACAAGTAGATTGAAGCTTATGCAATTGGAGCTAGAGATTGGAAGAGCAAGAAAACAGGGTATGTGCACTGGCAATGCATTAGATACCAGTTTTATGGGATCACCTGAAACAATAAATCCAGGGATTGTTGCGTTTGAAATTGAATATGGAAATTGGGTTGACGAGAACCATAGGCAGAATGAAGAGCTCAGAAATGTATTTCAAACTAACGCGTCCGAAGTGCAGCTTCGTCAAGTTGTTCAGAATGTATTGAGCCATTACTCGGATCTTTTCAGAATGAAAGCGGACGCTGCAAAGGCCGATGTCCTCTATTTAATCTCTGGTGTGTGGAAACCTTCCGTAGAGCGCCTTTTCCTATGGATCGGAGGAGCCCGCCCCTCACAGCTTCTAAATCTCATTGTGCCGCAACTTCAGCCATTGACCGATCCGCAAATGACAAGCATTAATAAACTTCACCTATCGTCTCAGCAAGCTGAAGATGCACTTTCACAAGGACTAGATAAACTTCAGCAGAGTCTGGTTCAAGACATGGCATTTGATCCATTAAGTGCAACAAATCATGGATTTCAGATGGCTATTGCTATAGGGAAATTCAAGGCACTAGAAGGTTTTGTAAGTCAGGCAGATCACCTTAGGCGGGAAACTCTAATACACATGTCACGAATCCTGTCTACGCACCAAGCTGCTAGGGGTTTGATTGCTCTCGGGGAATACTTTCATCGTCTTCGTACTCTTGGTTCTCTTTGGACTTCTCGTCCATGTGACTCCGTGATATCGCCTAGGATTACTCCTTAG 1077 0.4299 MDIYEPFQHVSMWGDSFKVEGGLNSIASPMLLVNTTTSMENKSEYIPHETNEPSEVNQETTNKDVSKVLRRLAQNREAARKSRLRKKAYVQQLETSRLKLMQLELEIGRARKQGMCTGNALDTSFMGSPETINPGIVAFEIEYGNWVDENHRQNEELRNVFQTNASEVQLRQVVQNVLSHYSDLFRMKADAAKADVLYLISGVWKPSVERLFLWIGGARPSQLLNLIVPQLQPLTDPQMTSINKLHLSSQQAEDALSQGLDKLQQSLVQDMAFDPLSATNHGFQMAIAIGKFKALEGFVSQADHLRRETLIHMSRILSTHQAARGLIALGEYFHRLRTLGSLWTSRPCDSVISPRITP 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02293 358 SMART brlzneu 63 123 IPR004827 GO:0003700|GO:0006355
Trre6g02293 358 ProSiteProfiles DOG1 domain profile. 136 346 IPR025422 GO:0006351|GO:0043565
Trre6g02293 358 Gene3D - 66 116 - -
Trre6g02293 358 Pfam Seed dormancy control 155 228 IPR025422 GO:0006351|GO:0043565
Trre6g02293 358 Coils Coil 86 113 - -
Trre6g02293 358 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 70 85 IPR004827 GO:0003700|GO:0006355
Trre6g02293 358 PANTHER TRANSCRIPTION FACTOR TGA9 1 348 - -
Trre6g02293 358 Pfam bZIP transcription factor 67 95 IPR004827 GO:0003700|GO:0006355
Trre6g02293 358 FunFam BZIP family transcription factor 66 115 - -
Trre6g02293 358 SUPERFAMILY Leucine zipper domain 67 99 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02293 Trre-Chr6 19773545 19775434 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02293 1 347 Calmodulin-binding Proteins AT1G22070 51.630 9.74e-126 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre6g02293 DOG1 1.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02293 K14431 - gmx:100794268 523.472