Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02279 ATGCTTTCTTTCCTCTGCACCTTGTTATTGCCGCCGATGACCGGAGAACGATGTTACCGCCGGAAGAATACGACGGAAGAACATTCTCCCGCCGTTATGGAAGAGATGCCCACTCCGGCCGATATTCCGGCGGAAATTCCGGCCGTGTTGGAGATTGATTACTTCTCGCAGGCGAGAAAAGCGCTTAGCGAACGTTGTCCTTTTGATGTTGCTGAGGAAACGTCGACTTCTGCTGCGGTTACTCTGCCGAGTGGTTTAGCTAGTTTGTTGAACCGTCATGGAGATAACCGGAAGCGCCACAAGAAGTCTCATTCCGGTGGCGGTGATAAAAAGAAGAAGAAATCTTCTAGGGCTAGCGAGAAATTGCGTAGTTTTAATGTTTGGGTTGAGACGGAGGAGTATTTTAGGGACTTGAATTTGTCTGATATTGATACTTTATTGGAAGCTTATTCGTCTTATAGTTTAGCTTCTCGTGAGTGTTTTACAATTCCGCAATTTGGAAATGCCACTGGGTTCAATGTAGTTAGTAGTGAGGATGAGAAGAAGCATTCTCCAATATTCAATGTAGTTAACAGTGAGAATGAGAAGAATGCTGTTGAAGAGGTAAACAACGAGAATGGTTCCTTGGGAATTGAGTTAAGTGATGTTGTTGAATTGGAAAAAGCTTTGCCACTTGATGATGATAAAAATTGTGATGCTTCTGATGATTCCTGTGTTAGTTTAGAGTGGTTTTTAGGTAGTAAGAATAGAATTTTTTTAGCTTCTGAGCGCCCGTCTAAGAAAAGGAAGCTTTTAGGTGGTGATGCTGGGTTGGAGAAAGTTGTAATGACTAGTCCTTCGGAAGGGGACCAACCTTATTGTCATTATTGTGGCAGTGGAGATTCTGGCACTGATTCCAATCGGTTAATAGTCTGCTCTTCTTGTAAAGTCGCAGTTCATCGGAAGTGCTATGGTATACATGACAATGTGGACGAGTCTTGGTTGTGTTCTTGGTGTAAGCAAAAGGGCGATGTTGATGACTCGGTGACTCCTTGTGTTCTTTGCTCAAAGAAGGGTGGTGCTTTAAAACCAACTAATAGTGTTAATGAAGATCTTGGGTCTTCCCAGTTTGTGCACCTGTTTTGTGGTCTGTGGATGCCAGAGGTTTATATTGATGATTTGAAGAAGATGGAGCCTGTTATGAATGTGGGAGACATCAAGGAAACCAGAAGAAAATTGGTGTGTAATGTTTGCAAATTGAAATGTGGTGCATGTGTTCGGTGTACTCATGGATCCTGCAGAACTCCTTTCCATCCTTTATGTGCAAGGGAAGCTAAACATAGAATGGAAGTTTGGGCAAAGTACGGTATTGATGATATTGAACTGCGGGCTTTTTGCTCGAAACACTCTGATCTACAAGAGAACAGAAACATCTTGCCATCAGGAGGCTCTATTGCAGTTGGCAGTGAAATTCCAGAAGCTAATGACCTTCCAGTGACTTTGCCAGTGAAAAGTGAACACAATTTAAAAATTGGTTGCAGCAATGGAGGGTTGGAGTCTGATAGTAATCCAGACAAGTTGAACCATAATGATGAAACTCCTAACGGAGGATTGTCTGTCTGTACGATTAGTGCTCAAAATATGTTGGGATGTGGCGCTGCGCCACCACATAATATTGGGGTGGCAGGGAGAACCAATGAGAATGTTAATGCCTCTGAATCCCCCAGTTTTGTACTTGTTTTGAGAAAGTTGATAGATAAAGGGAAAGTTGATGTAAAAGATGTAGCATTGGAGATTGGCATTTCACCAGATACATTAGCTGCAAATATCAATGAAGCTTATATGGCCCCTGACGTGCAACACAAAATATTCAATTGGCTAAAAGCTCATGTGTATACCGGTGCATCTCATAAAAGCTTAAAAGCCAAATTCAAACCGGCCAATGTATCTATAAATGAAACTGGCGCTTCAAACGGTTCTGATACTTCACCGTTATCTGATTCAGGCTTGCTGGATCCTGTTGCTGTTAATGTTAAGTCTGTACCACCAAGGAGACGAACTATCAATAACATTAGGATTTTGAAGGATAATAAAATTATATGTTCATCTGAGGGGGTTACCAGTAGTGAGAATGGGGTGTCAATTGATAAGTTCCTAGTTTGTCAGCCTGAGTGTGAAAGTCCAGGACGTTCTGACAAAGCATCAATTCCTGATGCCATTGAAACGAATTTAACTAAGTCTGAGGATATATTTCATGAGGTTCAAGGCAATGCTGATGAGCCCTACAAATCCAGCTTATCTGTATGCGTTTCAGAACAGAAGTCTGCTGCTTGCTTGCCGAATGCTTCTATGCTTTCAGATCAGCACTATCCAGCTCATTCTGCTTCAGAACCACCCGTTCCTGGTTTCATAAAAATGGAAGCAATCTCTAGTTACATTCACCCTTACATTAACAAGAAATTGCTGCAGATTCGTGATGGCTTGCCCTCAGGGGATCTTATGGGTTTAAGTGGCTACAGAAATTCTTTGATTGAACCCTTTGGAACTAATAGCTGCTCAAGTAGTGAAAACCAGCAATTAATTTGCACTGACGTTTCCAAGACTGATCAAGTAAAGGCGGAGCAGTTGGATAGGGATGAGTTGGAGGGGGAACTTATATATTTTCAGAATAGACTGCTGCAGAAAGCAGTTGCAAAAAACAGGCTTACTGAAAACTTAGTCTACAATGTTGCCAAGATTTTGCCTCAGGAGATTGATAAAACACATCAACAAAGATGGGATGCTGTGATTGCTAATCAATATCTGTGTGATCTTAGGGAGGCAAAGAAACAAGGTAGAAAAGAAAAAAAGCACAAGGAAGCACAGGCAGTGTTGGCTGCTGCAACTGCAGCAGCAGCATCATCTTCTAGGGTTTCTTCTTTACGTAAAGATACCATAGATGAATCTTTACAACAGAATTCATTAAAGTTGGATGCTTTAAGTGGGCGGACTGGTATATGTTCTCAGCCAATGCCACGTGCCAAAGAGACTCTTTCTAGAGTTGCTGTCACTAGAGCTTCAACAGAGAATTTTTCTCTGCCAAGCTCAGATTTTTCTAAGGGGCAACGTAAATCATGTGATATCTGCAGACGCTTTGAGAATATGTTAAATCCTATCCTAGTGTGCTCTGGTTGCAAGGTTGCAGTGCACTCAGTTTGCTATCGCAGTGTGAAGGAAACAACAGGTCCATGGTACTGTGAATTATGTGAAGATCTATTGTCCAGAAGTTCTGGTACATCTGATATAAATAGCTGGGAGAAGCCTTATTTTGTTGCAGAATGTGCTCTCTGTGGTGGTACTACCGGTGCTTTTAGGAAGTCATCTGATGGTCAATGGGTTCATGCCTTTTGTGCCGAGTGGCTTTTTGAGTCTACATTCAGAAGAGGACAGACAGATGTAATTGAAGGAATGGAGACTGTGCCAAAAGGAATTGATATTTGTTGCATCTGCCACCGCAAGCATGGTGTATGCATGAAGTGTTGCTATGGCCATTGCCTGACCACATTCCATCCATCCTGTGCTAGAAGTGCTGGTTTGTTCATGATTGTGAGGACTGCTGCCGGGGGAAAGATGCAACACAAGGCTTACTGTGAAAAGCATAGTTCGGAGCAGAGAGCAAAGGCTGAAAATCAAAAGCATGGAGTTGAAGAGTTAAAAAGTATCAAGCAAATTAGGGTTGAACTTGAGAGATTACGCCTCCTTTGTGAAAGAATTGTCAAAAGGGAAAAGATAAAGCGGGAATTGGTTCTATGCTCACACGACATACTAGCCTTTAAAAGAGATCATGTTGCTAGGTCTGTGCTTGTTCATAGTCCTTTCGTCCTTCCAGATGGTAGCTCAGAATCAGCTACAACATCCCTTAAAGCGACCACAGAGGGGTACAGATCGTGCAGTGAAGCTCTCCAAAGATCAGATGACGTAACTGTGGATAGCTCAGTTTCTGCTAAGCACCGTGTCAGAGTTGCCGTATCCATGGACACAGACCCAAAGTTGGACGATGACTGCTCAACCTCACAAAGTCACTATAACCACAAGATTCCAGAGAAAAAGCAATTTTCTGGCAAACAGATTCCTCGTAGAGCTTCTGCTACATCACGCAATATCTCTGAGGAGGACGGATGGAGATCCAAATCTCGAAAGTTACAGGCTACTGAAACATTTGGAAAAGAGCTTGTTATGACATCAGATGAAGCATCTATGAAGAATTCAAGGCTACCTAAAGGATATGCATATGTTCCCGCGGATTGCCTGTCAAATGACAAACAGTCTAATGAGGATGTATATGCTAGTGGACCAGGGGAACAGGACAGGTAG 4332 0.4247 MLSFLCTLLLPPMTGERCYRRKNTTEEHSPAVMEEMPTPADIPAEIPAVLEIDYFSQARKALSERCPFDVAEETSTSAAVTLPSGLASLLNRHGDNRKRHKKSHSGGGDKKKKKSSRASEKLRSFNVWVETEEYFRDLNLSDIDTLLEAYSSYSLASRECFTIPQFGNATGFNVVSSEDEKKHSPIFNVVNSENEKNAVEEVNNENGSLGIELSDVVELEKALPLDDDKNCDASDDSCVSLEWFLGSKNRIFLASERPSKKRKLLGGDAGLEKVVMTSPSEGDQPYCHYCGSGDSGTDSNRLIVCSSCKVAVHRKCYGIHDNVDESWLCSWCKQKGDVDDSVTPCVLCSKKGGALKPTNSVNEDLGSSQFVHLFCGLWMPEVYIDDLKKMEPVMNVGDIKETRRKLVCNVCKLKCGACVRCTHGSCRTPFHPLCAREAKHRMEVWAKYGIDDIELRAFCSKHSDLQENRNILPSGGSIAVGSEIPEANDLPVTLPVKSEHNLKIGCSNGGLESDSNPDKLNHNDETPNGGLSVCTISAQNMLGCGAAPPHNIGVAGRTNENVNASESPSFVLVLRKLIDKGKVDVKDVALEIGISPDTLAANINEAYMAPDVQHKIFNWLKAHVYTGASHKSLKAKFKPANVSINETGASNGSDTSPLSDSGLLDPVAVNVKSVPPRRRTINNIRILKDNKIICSSEGVTSSENGVSIDKFLVCQPECESPGRSDKASIPDAIETNLTKSEDIFHEVQGNADEPYKSSLSVCVSEQKSAACLPNASMLSDQHYPAHSASEPPVPGFIKMEAISSYIHPYINKKLLQIRDGLPSGDLMGLSGYRNSLIEPFGTNSCSSSENQQLICTDVSKTDQVKAEQLDRDELEGELIYFQNRLLQKAVAKNRLTENLVYNVAKILPQEIDKTHQQRWDAVIANQYLCDLREAKKQGRKEKKHKEAQAVLAAATAAAASSSRVSSLRKDTIDESLQQNSLKLDALSGRTGICSQPMPRAKETLSRVAVTRASTENFSLPSSDFSKGQRKSCDICRRFENMLNPILVCSGCKVAVHSVCYRSVKETTGPWYCELCEDLLSRSSGTSDINSWEKPYFVAECALCGGTTGAFRKSSDGQWVHAFCAEWLFESTFRRGQTDVIEGMETVPKGIDICCICHRKHGVCMKCCYGHCLTTFHPSCARSAGLFMIVRTAAGGKMQHKAYCEKHSSEQRAKAENQKHGVEELKSIKQIRVELERLRLLCERIVKREKIKRELVLCSHDILAFKRDHVARSVLVHSPFVLPDGSSESATTSLKATTEGYRSCSEALQRSDDVTVDSSVSAKHRVRVAVSMDTDPKLDDDCSTSQSHYNHKIPEKKQFSGKQIPRRASATSRNISEEDGWRSKSRKLQATETFGKELVMTSDEASMKNSRLPKGYAYVPADCLSNDKQSNEDVYASGPGEQDR 1443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02279 1443 ProSitePatterns Zinc finger PHD-type signature. 1032 1075 IPR019786 -
Trre6g02279 1443 SUPERFAMILY FYVE/PHD zinc finger 1024 1076 IPR011011 -
Trre6g02279 1443 Coils Coil 1227 1247 - -
Trre6g02279 1443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 338 IPR013083 -
Trre6g02279 1443 Pfam PHD-finger 300 333 - -
Trre6g02279 1443 Pfam PHD-finger 1043 1076 - -
Trre6g02279 1443 PANTHER PHD FINGER PROTEINS 97 971 - -
Trre6g02279 1443 MobiDBLite consensus disorder prediction 1420 1443 - -
Trre6g02279 1443 ProSiteProfiles Zinc finger PHD-type profile. 1029 1078 IPR019787 -
Trre6g02279 1443 MobiDBLite consensus disorder prediction 94 111 - -
Trre6g02279 1443 MobiDBLite consensus disorder prediction 507 526 - -
Trre6g02279 1443 ProSiteProfiles Extended PHD (ePHD) domain profile. 342 463 IPR034732 -
Trre6g02279 1443 SUPERFAMILY FYVE/PHD zinc finger 277 334 IPR011011 -
Trre6g02279 1443 ProSitePatterns Zinc finger PHD-type signature. 287 332 IPR019786 -
Trre6g02279 1443 SMART PHD_3 407 463 IPR001965 -
Trre6g02279 1443 SMART PHD_3 1031 1076 IPR001965 -
Trre6g02279 1443 SMART PHD_3 1152 1207 IPR001965 -
Trre6g02279 1443 SMART PHD_3 286 333 IPR001965 -
Trre6g02279 1443 ProSiteProfiles Zinc finger PHD-type profile. 284 335 IPR019787 -
Trre6g02279 1443 MobiDBLite consensus disorder prediction 1331 1387 - -
Trre6g02279 1443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 339 465 IPR013083 -
Trre6g02279 1443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1097 1209 IPR013083 -
Trre6g02279 1443 MobiDBLite consensus disorder prediction 90 118 - -
Trre6g02279 1443 Pfam PHD-zinc-finger like domain 1099 1206 - -
Trre6g02279 1443 Pfam PHD-zinc-finger like domain 344 462 - -
Trre6g02279 1443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1010 1083 IPR013083 -
Trre6g02279 1443 ProSiteProfiles Extended PHD (ePHD) domain profile. 1097 1207 IPR034732 -
Trre6g02279 1443 MobiDBLite consensus disorder prediction 1331 1361 - -
Trre6g02279 1443 MobiDBLite consensus disorder prediction 508 526 - -
Trre6g02279 1443 CDD ePHD 1100 1206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02279 Trre-Chr6 19654992 19665335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02279 283 470 C2H2 Transcription Factor Family AT3G14740 28.796 2.80e-17 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre6g02279 zf-HC5HC2H_2 3.6e-23 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02279 - - tpra:123896915 2607.4