Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02271 ATGTGCAGAGCAGGATTTGCAATATTTTCATTTTCATTTTCATTTGGGGGGTGTTCATTGTCTGTATTTGTTAGGACACCATATGAGAGATGTGGCCCAACTGGGCTTTTAGCACAGCTGCAAATCCCCAGACCTGTATCCAATGGGTTTGTGCTAGAACTAGAAGGAATAGGAAATAGGAGTGTGGGTTTGTTGTTAGGATATCTTCATGATCAAAATGTAGTTCACAGGGACATCAAATCTGCAAATATATTGATAGACGCAAGTGGATCTTTCAAACATGCAGATTTTGGGTCAGCAAAGGCAACCAAAATGATTGATGTTGAATCATGTGAGGGGAAAGCGTTCTGGATGGCCCCTGAGGTTTGCCTTCAATCTTATGAGCAGAAATACCGAATAATGGTTCTACTTTTTTCATCGGTAATTATGTTAATAGCCTGGATGCAAGACTCTAGCTTGAGTTCTACTCTTTTTTCAGCCGAGAACGACCATATTAAATGA 501 0.4012 MCRAGFAIFSFSFSFGGCSLSVFVRTPYERCGPTGLLAQLQIPRPVSNGFVLELEGIGNRSVGLLLGYLHDQNVVHRDIKSANILIDASGSFKHADFGSAKATKMIDVESCEGKAFWMAPEVCLQSYEQKYRIMVLLFSSVIMLIAWMQDSSLSSTLFSAENDHIK 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02271 166 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 66 130 - -
Trre6g02271 166 Pfam Protein kinase domain 66 153 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g02271 166 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Trre6g02271 166 SUPERFAMILY Protein kinase-like (PK-like) 66 133 IPR011009 -
Trre6g02271 166 ProSitePatterns Serine/Threonine protein kinases active-site signature. 74 86 IPR008271 GO:0004672|GO:0006468
Trre6g02271 166 Gene3D Transferase(Phosphotransferase) domain 1 50 164 - -
Trre6g02271 166 ProSiteProfiles Protein kinase domain profile. 1 166 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02271 Trre-Chr6 19560990 19562837 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02271 66 131 MAP Kinase Kinase Kinase AT4G08500 56.061 8.16e-20 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Trre6g02271 Pkinase 5.1e-18 CL0016