Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02270 ATGTGCAGAGCAGGATTTGCAATATTTTCATTTTCATTTTCATTTGGGGGGTGTTCATTGTCTGTATTTGTTAGGACACCATATGAGAGATGTGGCCCAACTGGGCTTTTAGCACAGCTGCAAATCCCCAGACCTGTATCCAATGGGTTTGTGCTAGAACTAGAAGGAATAGGAAATAGGAGTTATCTTCATGATCAAAATGTAGTTCACAGGGACATCAAATCTGCAAATATATTGATAGACGCAAGTGGATCTTTCAAACATGCAGATTTTGGGTCAGCAAAGGCAACCAAAATGATTGATGTTGAATCATGTGAGGGGAAAGCGTTCTGGATGGCCCCTGAGGTTTGCCTTCAATCTTATGAGCAGAAATACCGAATAATGGTTCTACTTTTTTCATCGGTAATTATGTTAATAGCCTGGATGCAAGACTCTAGCTTGAGTTCTACTCTTTTTTCAGCCGAGAACGACCATATTAAATGA 483 0.3996 MCRAGFAIFSFSFSFGGCSLSVFVRTPYERCGPTGLLAQLQIPRPVSNGFVLELEGIGNRSYLHDQNVVHRDIKSANILIDASGSFKHADFGSAKATKMIDVESCEGKAFWMAPEVCLQSYEQKYRIMVLLFSSVIMLIAWMQDSSLSSTLFSAENDHIK 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02270 160 ProSiteProfiles Protein kinase domain profile. 1 160 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g02270 160 SUPERFAMILY Protein kinase-like (PK-like) 62 121 IPR011009 -
Trre6g02270 160 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Trre6g02270 160 ProSitePatterns Serine/Threonine protein kinases active-site signature. 68 80 IPR008271 GO:0004672|GO:0006468
Trre6g02270 160 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 61 125 - -
Trre6g02270 160 Gene3D Transferase(Phosphotransferase) domain 1 54 158 - -
Trre6g02270 160 Pfam Protein kinase domain 61 147 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02270 Trre-Chr6 19560990 19562837 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02270 62 125 MAP Kinase Kinase Kinase AT4G08500 56.250 1.32e-19 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Trre6g02270 Pkinase 8.9e-18 CL0016