Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02268 ATGCTAACGGGCGAAATTCCATACTCCAATTTAGAATGTATGCAGGCAATATTTAGAATTGGAAAAGGCGAGCCACCTCCTATTCCTGACACTCTTTCAAGAGATGCAAAGGATTTTATCTTGCAGTGCCTTCAAGTTAATCCTGATGATCGTCCTACTGCTGCTCAACTCTTAAACCATCCATTTCTCCAAAGGCCACTTTCCCAGTCTTCATCTCCTTACATTCATGGCAGAAGGGGTTAA 243 0.4239 MLTGEIPYSNLECMQAIFRIGKGEPPPIPDTLSRDAKDFILQCLQVNPDDRPTAAQLLNHPFLQRPLSQSSSPYIHGRRG 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02268 80 Gene3D Transferase(Phosphotransferase) domain 1 1 76 - -
Trre6g02268 80 Pfam Protein kinase domain 1 63 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g02268 80 SUPERFAMILY Protein kinase-like (PK-like) 1 69 IPR011009 -
Trre6g02268 80 ProSiteProfiles Protein kinase domain profile. 1 63 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g02268 80 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02268 Trre-Chr6 19556600 19557207 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02268 1 67 MAP Kinase Kinase Kinase AT4G08500 68.657 5.38e-28 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Trre6g02268 Pkinase 5.7e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02268 K13414 - gmx:100819999 140.198