Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02267 ATGATTACTAATTATTTGATCGGGAATATGCAGGTTTTGAAAGGAAAAAACAAAGGTTGCTGGTTTCCAGCTGATGTTTGGAGTCTGGGATGCACTGTGCTGGAGATGCTAACGGGCGAAATTCCATACTCCAATTTAGAATGTATGCAGGCAATATTTAGAATTGGAAAAGGCGAGCCACCTCCTATTCCTGACACTCTTTCAAGAGATGCAAAGGATTTTATCTTGCAGTGCCTTCAAGTTAATCCTGATGATCGTCCTACTGCTGCTCAACTCTTAAACCATCCATTTCTCCAAAGGCCACTTTCCCAGTCTTCATCTCCTTACATTCATGGCAGAAGGGGTTAA 348 0.4195 MITNYLIGNMQVLKGKNKGCWFPADVWSLGCTVLEMLTGEIPYSNLECMQAIFRIGKGEPPPIPDTLSRDAKDFILQCLQVNPDDRPTAAQLLNHPFLQRPLSQSSSPYIHGRRG 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02267 115 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 12 107 - -
Trre6g02267 115 ProSiteProfiles Protein kinase domain profile. 1 98 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g02267 115 Gene3D Transferase(Phosphotransferase) domain 1 2 110 - -
Trre6g02267 115 SMART serkin_6 5 98 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g02267 115 Pfam Protein kinase domain 17 98 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g02267 115 SUPERFAMILY Protein kinase-like (PK-like) 19 104 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02267 Trre-Chr6 19556600 19557312 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02267 17 102 MAP Kinase Kinase Kinase AT4G08500 68.605 1.63e-37 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Trre6g02267 Pkinase 2.1e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02267 K13414 - gmx:100819999 181.03