Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02266 ATGGATTCCAAAAAGCTTTCAAGAAAACCTAAACACGAACGCCGTGATGCTCTCAAGCATTTCAATTACGACGCCCAATCATCTTTCTCCTCGTTCGACTCATCTAGTTCAGTCTACACTTGTTCCACCGACTTAAACGACCGCACTAGCTTCCGAGTTGATGGAATCGAAGGCGAGTTTGATCGAATTTGTATGAGTTTAGGACTTTCTGGACCTGAAGATTTTGCAATTCCTGCTGCTGCTTGGGAAGCTATGAAGTTTCGATCGTCTTCGGATATTCTTCCAAGTTTGAAGATCGAGGATATTGATCTTCAGCAGCAGAAGGTGGAAGAAGTTGAATTGAGTGAGAAATGTGAAGATAGGGATAGGGATAGTGTTAGGGTTACAGATGAGGTTGCTGAGACTGTTGTTGTTGGTAGTGGTAGTGGTGGTGGTATCAATGGAATTCGTCCACCTATGATTAAGCCGCCACCAGGGATGAGAGTTCCGGTTGATGATAACATGTGTTCAACTTGGGACCTTATGAAGGAATTGGCTCCGGTAGTGGAAGGGGAAGAAGGGCTTTTCAACTGGGAAATGGCGGAGAAAGAAAGCGAGGAGGTTGATAAGGTAAGTCCCAAGAAAGAGGAGGAAGATGTGGTGGTGGATAATGTGGCAATGATTGCTGAGATTGTTGATAGTCTTTCAGATTTTAGTACTTCGAATGAAGATGATTTTTCTAGCACTGCCGCGGAACCTAGTGTTTCTCCTAATGGGAGAATTAAGCGTGTTATTACCCCTGGATGCTGGCAAAAGGGTGAGCTTTTGGGGCGAGGTTGGTTTGCATCTGTCTATGAAGGAATTTCTGAAGACGGATCCTTTTTATCTGTAAAGCAAGTTTCACTGCTTGATCTAGCGGATCAGGAAAAACAAAGTGTCTATCAACTGGAGCAGGAAATTGCACTTTTGAGCAATTTGGAACATGAAAATATTGTTCGATACCTTGGTACTGAAATGGATAAATCCATGCTGTATATCTTTACTGAGTTTGCAACCAAAGATTCTCTTAGGACCCTCTATCGGAGGTATACTCTCCGAGATTCGCAAGCATCTGCCTATACGAGACAAACTCTGCATGGTTTGAAGTATCTTCACGATCAAAATGTAGTTCACAGGGACATCAAATGTGCAAATATATTGATAGACGCAGATGGATCTGTCAAACTTGCAGATTTTGGGTTAGCAAAGGTAACCAAATTGATTGATATTAAATCATGCGAGGGGACAGCGTTCTGGATGGCCCCTGAGGTTGTGAAAGGAAAAAACAAAGGTTATGGGCTTCCAGCTGATGTTTGGAGTCTGGGATGCACTGTGCTGGAGATGCTAACGGGCGAAATTCCATATTCCAATTTAGAATGTATTTCTGCACTATTTAGAATTGGAAAAGGTGAGCTACCTCCTATTCCTGATACACTTTCAAGAGATGGAAAGGATTTTATCTTGCAGTGCCTTCAAGTTAATCCTGATGATCGTCCTACTGCTGCTCAACTCTTAAACCATCCATTTGTCCAAAGGTCATTTTCCTAG 1566 0.4266 MDSKKLSRKPKHERRDALKHFNYDAQSSFSSFDSSSSVYTCSTDLNDRTSFRVDGIEGEFDRICMSLGLSGPEDFAIPAAAWEAMKFRSSSDILPSLKIEDIDLQQQKVEEVELSEKCEDRDRDSVRVTDEVAETVVVGSGSGGGINGIRPPMIKPPPGMRVPVDDNMCSTWDLMKELAPVVEGEEGLFNWEMAEKESEEVDKVSPKKEEEDVVVDNVAMIAEIVDSLSDFSTSNEDDFSSTAAEPSVSPNGRIKRVITPGCWQKGELLGRGWFASVYEGISEDGSFLSVKQVSLLDLADQEKQSVYQLEQEIALLSNLEHENIVRYLGTEMDKSMLYIFTEFATKDSLRTLYRRYTLRDSQASAYTRQTLHGLKYLHDQNVVHRDIKCANILIDADGSVKLADFGLAKVTKLIDIKSCEGTAFWMAPEVVKGKNKGYGLPADVWSLGCTVLEMLTGEIPYSNLECISALFRIGKGELPPIPDTLSRDGKDFILQCLQVNPDDRPTAAQLLNHPFVQRSFS 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02266 521 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 129 519 - -
Trre6g02266 521 ProSitePatterns Serine/Threonine protein kinases active-site signature. 382 394 IPR008271 GO:0004672|GO:0006468
Trre6g02266 521 FunFam Mitogen-activated protein kinase 1, putative, expressed 261 521 - -
Trre6g02266 521 SMART serkin_6 263 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g02266 521 Pfam Protein kinase domain 264 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g02266 521 Gene3D Transferase(Phosphotransferase) domain 1 262 521 - -
Trre6g02266 521 ProSiteProfiles Protein kinase domain profile. 263 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g02266 521 SUPERFAMILY Protein kinase-like (PK-like) 246 518 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02266 Trre-Chr6 19527616 19538469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02266 4 518 MAP Kinase Kinase Kinase AT4G08500 48.354 2.63e-155 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Trre6g02266 Pkinase 2.5e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02266 K13414 - gmx:100819999 647.891