Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02263 ATGGCGGCTTCAGTAGATAACCGCATCTGGACAAGCCTTGAAAAAAGCACAGTTCATCATGCTTTCAGGTCAACCTCAGAGGTCAAACATTTCTATAAATCATCATCCAAACCGCAACCGCCATTACCATTCGATAAGAACTACTATTCTTCTTCCTCGAGCGACGAAGATGAAGAAGATGAGATTGAAACTGAGAATTTCAACAACAACCTCATTATGAAATCAAAAGAAACTGCAAAAGAATTACAACCGTCGATCTTCGATCCACGCAACGACGGAACATCAGATCAATGGATTCCACGGAACACTTCAATGGTCCGTCTCACAGGAAAACATCCTTTCAAGTTCAACTCAGAACCACCACTCCAACAACTAATGCAGCACGGTTTCATAACACCGGTCCCACTTCACTACGTTCGAAACCACGGGCCTGTTCCAAAAGCCCAATGGGATAATTGGACCGTTGAAGTAACAGGCCTAGTCAAAAGCCCAACCCAATTCACAATGGCCCAACTAATCAACGATTTCCCAAGCCGCGAATTCCCCGTTACACTTGTTTGCGCTGCTGTTCGAGCTTGGGATGAGTCCCTCAACACCCAACCTCAGAAACTAAATTGGAATCTCATGGGTATGATGAATAATTGTTGGTTCAAAGTAAAATCTAATTTATGTAAAGCTCACAAGGTGAAATTGGGATATTATTTGAGCACCCAACCCAACCAGGGAACCAATCAGTTGTGCATGCGAGCTTACACACCAACAAGTGGTGTAGATGAAGTTGGATATTTCGATCTAATTGTCAAGATTTACTTAAAAGGAGTGCACCCAAAATTCCCCAATGGTGGCCTAATGTCTCAATATTTGGACTCTTTGTCCATTGGCTCTGTTTTAGATATAAAGGGTCCATTGGGACATATTGAGTATACTGGTAAAGGAAATTTTCTTGTTCATGGAGAACACAAGTTTGCAAAGAGGTTAGCTATGTTGGCCGGTGGAACTGGGATAACACCAATTTACCAAGTGGTTCAAGCGATTCTGAAAGACCCAGAGGATCTAACTGAAATGCATGTTGTGTATGCTAATAGAAGTGAGGATGATATATTGTTGAGGGAAGAGATGAATGAATGGGCTAAGAAGCATGAAAGGTTCAAGATATGGTATGTAGTACAAGAAAGTAAAAGAGAAGGGTGGGAGTATAGTGTGGGATTCATTAATGAAAGTATTTTGAAGCAACATGTTCCGCCAGCTTCTCAAGATACATTAGCGTTGGTATGTGGGCCACCACCCATGATTCAGTTTGCAGTAAAGCCCAATTTAGAGAAGTTGGGTTACGATGTTACCAACAACTTACTCCTCTTTTAG 1362 0.4185 MAASVDNRIWTSLEKSTVHHAFRSTSEVKHFYKSSSKPQPPLPFDKNYYSSSSSDEDEEDEIETENFNNNLIMKSKETAKELQPSIFDPRNDGTSDQWIPRNTSMVRLTGKHPFKFNSEPPLQQLMQHGFITPVPLHYVRNHGPVPKAQWDNWTVEVTGLVKSPTQFTMAQLINDFPSREFPVTLVCAAVRAWDESLNTQPQKLNWNLMGMMNNCWFKVKSNLCKAHKVKLGYYLSTQPNQGTNQLCMRAYTPTSGVDEVGYFDLIVKIYLKGVHPKFPNGGLMSQYLDSLSIGSVLDIKGPLGHIEYTGKGNFLVHGEHKFAKRLAMLAGGTGITPIYQVVQAILKDPEDLTEMHVVYANRSEDDILLREEMNEWAKKHERFKIWYVVQESKREGWEYSVGFINESILKQHVPPASQDTLALVCGPPPMIQFAVKPNLEKLGYDVTNNLLLF 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02263 453 Pfam Oxidoreductase NAD-binding domain 328 435 IPR001433 GO:0016491
Trre6g02263 453 PRINTS Cytochrome B5 reductase signature 249 256 - -
Trre6g02263 453 PRINTS Cytochrome B5 reductase signature 327 346 - -
Trre6g02263 453 PRINTS Cytochrome B5 reductase signature 421 429 - -
Trre6g02263 453 PRINTS Cytochrome B5 reductase signature 365 376 - -
Trre6g02263 453 PRINTS Cytochrome B5 reductase signature 294 308 - -
Trre6g02263 453 PANTHER NADH-CYTOCHROME B5 REDUCTASE 231 449 IPR001834 GO:0016491
Trre6g02263 453 Pfam Oxidoreductase molybdopterin binding domain 142 216 IPR000572 -
Trre6g02263 453 Pfam Oxidoreductase FAD-binding domain 228 308 IPR008333 -
Trre6g02263 453 Gene3D - 304 453 IPR039261 -
Trre6g02263 453 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 397 413 IPR001709 GO:0016491
Trre6g02263 453 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 365 376 IPR001709 GO:0016491
Trre6g02263 453 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 353 362 IPR001709 GO:0016491
Trre6g02263 453 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 421 429 IPR001709 GO:0016491
Trre6g02263 453 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 327 346 IPR001709 GO:0016491
Trre6g02263 453 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 249 256 IPR001709 GO:0016491
Trre6g02263 453 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 281 290 IPR001709 GO:0016491
Trre6g02263 453 Gene3D Translation factors 217 303 - -
Trre6g02263 453 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 94 217 IPR036374 -
Trre6g02263 453 Pfam Mo-co oxidoreductase dimerisation domain 189 220 IPR005066 GO:0016491|GO:0030151
Trre6g02263 453 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 296 447 IPR039261 -
Trre6g02263 453 SUPERFAMILY Riboflavin synthase domain-like 227 310 IPR017938 -
Trre6g02263 453 Gene3D - 87 216 IPR036374 -
Trre6g02263 453 PRINTS Eukaryotic molybdopterin domain signature 108 122 IPR008335 GO:0016491
Trre6g02263 453 PRINTS Eukaryotic molybdopterin domain signature 183 194 IPR008335 GO:0016491
Trre6g02263 453 PRINTS Eukaryotic molybdopterin domain signature 130 146 IPR008335 GO:0016491
Trre6g02263 453 FunFam Nitrate reductase [NADH] 304 453 - -
Trre6g02263 453 MobiDBLite consensus disorder prediction 31 71 - -
Trre6g02263 453 CDD cyt_b5_reduct_like 248 445 - -
Trre6g02263 453 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 79 309 IPR017927 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02263 Trre-Chr6 19503402 19506225 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02263 231 444 NADPH P450 reductases AT5G17770 38.140 3.08e-42 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02263 K10534 - gmx:732634 370.163