Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02260 ATGCTTGAAGATTACTTGATCGGTAAGCTTGATGTAACGACAGAGACCGATGGAAATAATGTTGAAATCAACAACAAAGTTATTATCACACAAATGCATAACAATGTGGCTTTAAATAACCAACGTGAGAAAATTCCTTGTAAGCTTGTGTCAAAAAAATCCATCTCCCACAATGTTAGGATTTTTCGATTTGTGTTACCTTATGAAGATCAACTCTTGGGTTTGCCAGTTGGGAAACACTTATTTTTATGTGACACTATTGAAAATAAGCTATGCATGCGAGCTTTCACTCCAACAAGTGGTGTAGATGAAAAGGGTTATTTTGATCTAGTGGTTAAGATTTATTTCAAAGGGGTGCACCCAAAATACCCCAATGGTGGCATAATGTCTCAATATTTAGACTCTTTATCAATTGGTTCTGTTTTGAATATAAAGGGTCCATTGGGACACATAGAGTATAGTGGTAAAGGAAATTTTCTTGTTCATGGAGAACGCAAATTCGCAAAAAGGTTAGCAATGTTGGCCGGTGGAACTGGGATAACACCAATTTACCAAGTGGTTCAAGCGATTTTGAAAGATCCAGAAGATCTAACTGAAATGCATGTTGTGTATGCTAATAGAAGTGAGGATGATATATTGTTGAGGGAAGAGATGAATGAATGGGCTAAGAAGCATGAAAGGTTCAAGATATGGTATGTGGTACAAGAAAGTAAAAGAGAAGGGTGGGAGTATAGTGTGGGGTTCATTAGTGAAAGTATTTTGAAGAACCATGTTCCAAAAGCATCTGAGGATACACTGGCATTGGCATGTGGACCACCACCCATGATTGAAGGGGTGAAATCCAATTTGGAGAAATTGGAATATGACATCAAGAACAACTTGCTTGTGTTTTAG 894 0.3747 MLEDYLIGKLDVTTETDGNNVEINNKVIITQMHNNVALNNQREKIPCKLVSKKSISHNVRIFRFVLPYEDQLLGLPVGKHLFLCDTIENKLCMRAFTPTSGVDEKGYFDLVVKIYFKGVHPKYPNGGIMSQYLDSLSIGSVLNIKGPLGHIEYSGKGNFLVHGERKFAKRLAMLAGGTGITPIYQVVQAILKDPEDLTEMHVVYANRSEDDILLREEMNEWAKKHERFKIWYVVQESKREGWEYSVGFISESILKNHVPKASEDTLALACGPPPMIEGVKSNLEKLEYDIKNNLLVF 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02260 297 PRINTS Cytochrome B5 reductase signature 73 84 - -
Trre6g02260 297 PRINTS Cytochrome B5 reductase signature 266 274 - -
Trre6g02260 297 PRINTS Cytochrome B5 reductase signature 172 191 - -
Trre6g02260 297 PRINTS Cytochrome B5 reductase signature 210 221 - -
Trre6g02260 297 PRINTS Cytochrome B5 reductase signature 139 153 - -
Trre6g02260 297 PRINTS Cytochrome B5 reductase signature 94 101 - -
Trre6g02260 297 Pfam Oxidoreductase NAD-binding domain 173 280 IPR001433 GO:0016491
Trre6g02260 297 Gene3D Translation factors 34 148 - -
Trre6g02260 297 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 266 274 IPR001709 GO:0016491
Trre6g02260 297 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 210 221 IPR001709 GO:0016491
Trre6g02260 297 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 94 101 IPR001709 GO:0016491
Trre6g02260 297 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 126 135 IPR001709 GO:0016491
Trre6g02260 297 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 198 207 IPR001709 GO:0016491
Trre6g02260 297 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 242 258 IPR001709 GO:0016491
Trre6g02260 297 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 172 191 IPR001709 GO:0016491
Trre6g02260 297 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 142 291 IPR039261 -
Trre6g02260 297 FunFam NADH-cytochrome b5 reductase 32 148 - -
Trre6g02260 297 FunFam Nitrate reductase [NADH] 149 297 - -
Trre6g02260 297 SUPERFAMILY Riboflavin synthase domain-like 37 154 IPR017938 -
Trre6g02260 297 Pfam Oxidoreductase FAD-binding domain 47 153 IPR008333 -
Trre6g02260 297 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 42 154 IPR017927 GO:0016491
Trre6g02260 297 PANTHER NADH-CYTOCHROME B5 REDUCTASE 33 294 IPR001834 GO:0016491
Trre6g02260 297 Gene3D - 149 297 IPR039261 -
Trre6g02260 297 CDD cyt_b5_reduct_like 47 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02260 Trre-Chr6 19486551 19487444 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02260 48 288 NADPH P450 reductases AT5G17770 38.934 7.13e-52 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02260 K10534 - gmx:732634 441.039