Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02251 ATGGAGGAATTGCATAGAGCTCTGGAGAATCGTAGTTTAGCAGTTTCCACTGTCCAAGGAAAGGGTCGTTCTCTTTTTACTACTAGGGATTTCTACCCAGGGGAAGTGATTATTAGCCAAGAGCCATATGTTAGTGTTCCAACCCACAAAAGGTGTGATGGATGTTTCACAACAACTAATCTTAGCAAGTGTTCACGTTGTCAATTTGTTTGGTATTGTGGAACACCATGTCAGAAATCAGAGTGGAAGTTGCATCGTCTAGAATGTGAAGCACTCTCAAGGCTAGACAGCCTTAAGAGAAAATCTATCACACCATCGATACGGTTGATGCTTAAACTTTATATTCGAAGGAAGTTGCAAGATGAGAAGATCATTCCAACCACTGCTATGGACAACTACAAGTTAGTGGAGGCATTAGTGGCTCACATGTCTGACATCAAAGAGGAGCAGCTGGTGTTGTATGCACAGATGGCTAATCTTGTACACTTAATACTACAGTGGCCTGAAATCAATATAAAAGAGATTGCAGAAATTTTTTCCAAGTTTGCATGTAATGCGCATACCATTTGTGACAGTGAGTTGAGACCTTTGGGAACAGGATTGTATCCGGTTGTTTCCATTATCAATCACAGCTGCTTGCCCAATTCAGTGTTGGTTTTTGAAGGAAAGGTAGCATCAGTACGTGCTTTACAACATGTACCCAAAGGGACTGAGGTATTGATAAGTTATATAGAGACAGCTGGAAGCACCGTGACTCGACAAAAGGCTCTCAAAGAGCAGTACTTATTCACTTGTGTTTGTCCCCGCTGTTCTAAAGTGTTAGTTTTGAAGGGTCAGTATGAAGATGTTCAAGAAAATGCAATTCTAGAAGGATACAGATGCAAAAATGAAACATGTGATGGTTTCTTGCTCCGCACAACTGATGGAAAAGCATTTCAATGCCAAGAATGCGGGTTAGTTAGAGACAAGGAAGAGATAAAGCAAATTGCAACTGAAATTAAATTGCTATCAGAAGAAGCTTCCAAGTCTTCTTCCAGTGACAATTATCAAGATGCTATTTCCGTATATAAAATGATTGAGAAACTGCAAACAAAACTATATCATCCTTTCTCAATCAATTTGATGCAAACACGAGAGACAATTTTGAAGTCATTAATGAAGCTGGAACATTGGAGGGAAGCTTTAGCATATTGCAAATTGACCATACCAATCTATCAAAGAGTGTATCCTGCTGTTCACCCTCTGCTTGGATTGCAGTATTATACTTGTGGAAAACTTGAATGGTATCTTGGAGACACAGAGGAAGCTGTTAAATCATTGACGAAAGCTGTAGATATACTAAGGATTACTCATGGCACAAATACTCCTTTTGTGAAGGAACTCTTGATGATGTTGGAGGAAGCTCGTGCAGAAGCGTCTTACAAATTGTCGTCAAAAGAGGAGTAG 1446 0.3976 MEELHRALENRSLAVSTVQGKGRSLFTTRDFYPGEVIISQEPYVSVPTHKRCDGCFTTTNLSKCSRCQFVWYCGTPCQKSEWKLHRLECEALSRLDSLKRKSITPSIRLMLKLYIRRKLQDEKIIPTTAMDNYKLVEALVAHMSDIKEEQLVLYAQMANLVHLILQWPEINIKEIAEIFSKFACNAHTICDSELRPLGTGLYPVVSIINHSCLPNSVLVFEGKVASVRALQHVPKGTEVLISYIETAGSTVTRQKALKEQYLFTCVCPRCSKVLVLKGQYEDVQENAILEGYRCKNETCDGFLLRTTDGKAFQCQECGLVRDKEEIKQIATEIKLLSEEASKSSSSDNYQDAISVYKMIEKLQTKLYHPFSINLMQTRETILKSLMKLEHWREALAYCKLTIPIYQRVYPAVHPLLGLQYYTCGKLEWYLGDTEEAVKSLTKAVDILRITHGTNTPFVKELLMMLEEARAEASYKLSSKEE 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02251 481 ProSiteProfiles SET domain profile. 11 244 IPR001214 GO:0005515
Trre6g02251 481 SMART set_7 11 250 IPR001214 GO:0005515
Trre6g02251 481 SUPERFAMILY TPR-like 344 451 IPR011990 GO:0005515
Trre6g02251 481 Gene3D Tetratricopeptide repeat domain 401 479 IPR011990 GO:0005515
Trre6g02251 481 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 13 467 - -
Trre6g02251 481 Coils Coil 319 339 - -
Trre6g02251 481 Gene3D - 51 101 - -
Trre6g02251 481 SUPERFAMILY SET domain 12 243 IPR046341 -
Trre6g02251 481 Gene3D - 102 186 - -
Trre6g02251 481 Gene3D SET domain 24 270 IPR046341 -
Trre6g02251 481 ProSiteProfiles Zinc finger MYND-type profile. 52 89 IPR002893 -
Trre6g02251 481 Pfam MYND finger 52 89 IPR002893 -
Trre6g02251 481 Pfam SET domain 22 243 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02251 Trre-Chr6 19354885 19359768 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre6g02251 SET 5.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02251 K11426 - gmx:100789518 776.548