Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02250 ATGGAGGAATTGCATAGAGCTCTGGAGAATCGTAGTTTAGCAGTTTCCACTGTCCAAGGAAAGGGTCGTTCTCTTTTTACTACTAGGGATTTCTACCCAGGGGAAGTGATTATTAGCCAAGAGCCATATGTTAGTGTTCCAACCCACAAAAGGTGTGATGGATGTTTCACAACAACTAATCTTAGCAAGTGTTCACGTTGTCAATTTGTTTGGTATTGTGGAACACCATGTCAGAAATCAGAGTGGAAGTTGCATCGTCTAGAATGTGAAGCACTCTCAAGGCTAGACAGCCTTAAGAGAAAATCTATCACACCATCGATACGGTTGATGCTTAAACTTTATATTCGAAGGAAGTTGCAAGATGAGAAGATCATTCCAACCACTGCTATGGACAACTACAAGTTAGTGGAGGCATTAGTGGCTCACATGTCTGACATCAAAGAGGAGCAGCTGGTGTTGTATGCACAGATGGCTAATCTTGTACACTTAATACTACAGTGGCCTGAAATCAATATAAAAGAGATTGCAGAAATTTTTTCCAAGTTTGCATGTAATGCGCATACCATTTGTGACAGTGAGTTGAGACCTTTGGGAACAGGATTGTATCCGGTTGTTTCCATTATCAATCACAGCTGCTTGCCCAATTCAGTGTTGGTTTTTGAAGGAAAGGTAGCATCAGTACGTGCTTTACAACATGTACCCAAAGGGACTGAGGTATTGATAAGTTATATAGAGACAGCTGGAAGCACCGTGACTCGACAAAAGGCTCTCAAAGAGCAGTACTTATTCACTTGTGTTTGTCCCCGCTGTTCTAAAGTGGGTCAGTATGAAGATGTTCAAGAAAATGCAATTCTAGAAGGATACAGATGCAAAAATGAAACATGTGATGGTTTCTTGCTCCGCACAACTGATGGAAAAGCATTTCAATGCCAAGAATGCGGGTTAGTTAGAGACAAGGAAGAGATAAAGCAAATTGCAACTGAAATTAAATTGCTATCAGAAGAAGCTTCCAAGTCTTCTTCCAGTGACAATTATCAAGATGCTATTTCCGTATATAAAATGATTGAGAAACTGCAAACAAAACTATATCATCCTTTCTCAATCAATTTGATGCAAACACGAGAGACAATTTTGAAGTCATTAATGAAGCTGGAACATTGGAGGGAAGCTTTAGCATATTGCAAATTGACCATACCAATCTATCAAAGAGTGTATCCTGCTGTTCACCCTCTGCTTGGATTGCAGTATTATACTTGTGGAAAACTTGAATGGTATCTTGGAGACACAGAGGAAGCTGTTAAATCATTGACGAAAGCTGTAGATATACTAAGGATTACTCATGGCACAAATACTCCTTTTGTGAAGGAACTCTTGATGATGTTGGAGGAAGCTCGTGCAGAAGCGTCTTACAAATTGTCGTCAAAAGAGGAGTAG 1434 0.3989 MEELHRALENRSLAVSTVQGKGRSLFTTRDFYPGEVIISQEPYVSVPTHKRCDGCFTTTNLSKCSRCQFVWYCGTPCQKSEWKLHRLECEALSRLDSLKRKSITPSIRLMLKLYIRRKLQDEKIIPTTAMDNYKLVEALVAHMSDIKEEQLVLYAQMANLVHLILQWPEINIKEIAEIFSKFACNAHTICDSELRPLGTGLYPVVSIINHSCLPNSVLVFEGKVASVRALQHVPKGTEVLISYIETAGSTVTRQKALKEQYLFTCVCPRCSKVGQYEDVQENAILEGYRCKNETCDGFLLRTTDGKAFQCQECGLVRDKEEIKQIATEIKLLSEEASKSSSSDNYQDAISVYKMIEKLQTKLYHPFSINLMQTRETILKSLMKLEHWREALAYCKLTIPIYQRVYPAVHPLLGLQYYTCGKLEWYLGDTEEAVKSLTKAVDILRITHGTNTPFVKELLMMLEEARAEASYKLSSKEE 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02250 477 ProSiteProfiles SET domain profile. 11 244 IPR001214 GO:0005515
Trre6g02250 477 SMART set_7 11 250 IPR001214 GO:0005515
Trre6g02250 477 Pfam SET domain 22 243 IPR001214 GO:0005515
Trre6g02250 477 Gene3D Tetratricopeptide repeat domain 397 475 IPR011990 GO:0005515
Trre6g02250 477 Coils Coil 315 335 - -
Trre6g02250 477 Gene3D - 51 101 - -
Trre6g02250 477 SUPERFAMILY SET domain 12 243 IPR046341 -
Trre6g02250 477 Gene3D - 102 186 - -
Trre6g02250 477 Gene3D SET domain 24 270 IPR046341 -
Trre6g02250 477 SUPERFAMILY TPR-like 340 447 IPR011990 GO:0005515
Trre6g02250 477 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 13 463 - -
Trre6g02250 477 ProSiteProfiles Zinc finger MYND-type profile. 52 89 IPR002893 -
Trre6g02250 477 Pfam MYND finger 52 89 IPR002893 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02250 Trre-Chr6 19354885 19359768 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre6g02250 SET 5.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02250 K11426 - gmx:100789518 782.326