LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre6g02249	ATGGATGGGAAGTCTAACCTTCCGATCAAGCCAGATTCTTCTTCCCCGGACTTCCTCCGCCACGTTCAAGCCGCCTTGAAGCGTCACCGTCCTCTCGGTCAATCCAACAATATCATTAGACCAAGACGCACCATTCTTCTTCAACCTCAACATACAAACAACGATTCACTTCAAACTACCACCACTGTTGTTAACCCTTCTCAACATGCAAACAAACTTCAACAGGAAATGGAGTATGTTGAAGGCAATGAACCTGAAGATTCAATTGGAATCAACGACGATGATAATGATGATTCAAAGCAACCCAAAGTTCAGCAGGTTGAGACTGATTTTAGTTTGAGATCCGATGGAGGAGTGCCGAGGAGAACTACTGTTACGCGGGATAATTTGCAGCAGTTTAGAAACTTTCTAAGTCAGCCAGCGACGCAATCTTCGGTGGTGGGACCTTGTGCTACGACTACGTCGGTTCATTCAACTTCAGCTCCCATGATGAATTCAACCACCCGTTTGCATCGAGAAAGTGGCTCGCGCGTGGTTGCTGAACCTTTGGGAGAAATTGGTGTTTATCCTATAGCTGAAAGAGTTATGGAATCAGAAAATACAGATGCTTCTACGGAAAAAGATGATAAAATGTTAGTTGATAAGGCTGCAATTTCGGTGCAAGCTTCTGATTCTTGTGTGGATGCTGAGTTAGCATCTAGAGAGTGTGACCAATCGAAGGAGCAACAAGAATGCTTGTTGAAAGAAACCGACAATTCAAAATATGCTTCTTGTGGTGGTGACAAGATGACCAAAATGAAAGAGCCTGCAGATGTTGCCAATGTACACCGCCTGGTGCCCAAAACATCTTTGGATGTGAAGTCTGAATCTTCTAAATTAGAAAGACGAGAGAAGGCTGCGAGTAGTAAAGGTTCGTCAGTAGCTAAGAAAAGGTCCTATGACCCTGACTTGTTTTTTAAGGTTAATGGCAAGCTTTATCAACGTCTTGGCAAGATAGGTAGTGGTGGAAGTAGTGAGGTGCACAAGGTTATTTCATCAGATTGTAGGATATATGCACTTAAGAAGATCAAACTCAGGGGTCGTGATTATGCTACTGCATACGGGTTTTGTCAAGAGATTGAGTATCTAAATAGGCTGAGAGGAAAGGATAATATTATTCAGCTTATAGATTATGAGGTGACTGACAAGGCTTTGCTTGAAGAAGTTATGAAAGGCTCTCTTAGTAATAAGGATGGCCGAGTCAAAGATGATGGATATATATACATGGTTCTTGAATACGGTGAAATTGATTTAGCTCACATGTTGTCCCAGAAGTGGAAGGAACTGGATGGATCCAAAGAGACCATAGACGAGAACTGGCTTCGGTTTTATTGGCAGCAAATTCTTCAAGCTGTCAATACAATTCACGAGGAACGTATTGTGCACTCTGACTTGAAGCCTGCTAACTTCCTCCTCGTCAAGGGTTCCCTAAAACTGATTGACTTTGGCATCGCCAAAGCAATAATGAGTGATACTACTAATATCCAACGGGAATCACAGGTGGGTACTCTGAGTTACATGTCTCCGGAAGCATTTATGTGCAATGAGACTGATGCAAACGGAAACATCATCAAGTGCGGTCGGCCATCAGATATCTGGTCTTTGGGATGCATCCTTTATCAAATGGTATATGGGAGAACCCCTTTTTCAGAATACAAGACATTCTGGGCCAAATTTAAAGTTATAACAGATCCAAATCATGAAATTACGTACGAACCACTTTCAAATCCATGGCTAGTGGATCTTATGAAGAGGTGTCTAGCATGGGATCGCAATCAAAGGTGGAGAATTCCTCAGTTACTGCAACATCCTTTTCTTGCACCTCATGTACTACCTCACCCATGTTTGTCCCAAGACCATAGCTGTAAATTTGTACAACTTATCACTGAAACTTGTACATATGACCCTGAAGCATCCCAACTTTGTCATCAGCTCCAACGTCTACTTGTTGATCCACTCGGCTTAACAACCCACTCACTAAATTCACAAGATCAACAAAGAACACTGTTGTCCAAAATGTCTGAACTCTGTATTCAACTGCGGGAACGTTTGGTAGATACTGATAGGGAACCTTTGGTAGATACTGATATCAAGTAA	2136	0.4232	MDGKSNLPIKPDSSSPDFLRHVQAALKRHRPLGQSNNIIRPRRTILLQPQHTNNDSLQTTTTVVNPSQHANKLQQEMEYVEGNEPEDSIGINDDDNDDSKQPKVQQVETDFSLRSDGGVPRRTTVTRDNLQQFRNFLSQPATQSSVVGPCATTTSVHSTSAPMMNSTTRLHRESGSRVVAEPLGEIGVYPIAERVMESENTDASTEKDDKMLVDKAAISVQASDSCVDAELASRECDQSKEQQECLLKETDNSKYASCGGDKMTKMKEPADVANVHRLVPKTSLDVKSESSKLERREKAASSKGSSVAKKRSYDPDLFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCRIYALKKIKLRGRDYATAYGFCQEIEYLNRLRGKDNIIQLIDYEVTDKALLEEVMKGSLSNKDGRVKDDGYIYMVLEYGEIDLAHMLSQKWKELDGSKETIDENWLRFYWQQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRESQVGTLSYMSPEAFMCNETDANGNIIKCGRPSDIWSLGCILYQMVYGRTPFSEYKTFWAKFKVITDPNHEITYEPLSNPWLVDLMKRCLAWDRNQRWRIPQLLQHPFLAPHVLPHPCLSQDHSCKFVQLITETCTYDPEASQLCHQLQRLLVDPLGLTTHSLNSQDQQRTLLSKMSELCIQLRERLVDTDREPLVDTDIK	711

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre6g02249	711	FunFam	serine/threonine-protein kinase mph1 isoform X1	440	622	-	-
	Trre6g02249	711	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	473	485	IPR008271	GO:0004672\|GO:0006468
	Trre6g02249	711	ProSitePatterns	Protein kinases ATP-binding region signature.	332	354	IPR017441	GO:0005524
	Trre6g02249	711	Pfam	Protein kinase domain	326	619	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre6g02249	711	PANTHER	MIXED LINEAGE PROTEIN KINASE	47	652	-	-
	Trre6g02249	711	FunFam	serine/threonine-protein kinase mph1 isoform X2	319	406	-	-
	Trre6g02249	711	MobiDBLite	consensus disorder prediction	144	175	-	-
	Trre6g02249	711	Gene3D	Phosphorylase Kinase; domain 1	319	406	-	-
	Trre6g02249	711	SUPERFAMILY	Protein kinase-like (PK-like)	319	642	IPR011009	-
	Trre6g02249	711	Gene3D	Transferase(Phosphotransferase) domain 1	440	624	-	-
	Trre6g02249	711	SMART	serkin_6	326	619	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre6g02249	711	MobiDBLite	consensus disorder prediction	84	105	-	-
	Trre6g02249	711	Coils	Coil	229	249	-	-
	Trre6g02249	711	MobiDBLite	consensus disorder prediction	144	173	-	-
	Trre6g02249	711	MobiDBLite	consensus disorder prediction	286	307	-	-
	Trre6g02249	711	CDD	PKc_Mps1	324	619	IPR027084	-
	Trre6g02249	711	MobiDBLite	consensus disorder prediction	287	307	-	-
	Trre6g02249	711	ProSiteProfiles	Protein kinase domain profile.	326	619	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre6g02249	Trre-Chr6	19349725	19353590	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre6g02249	332	619	MAP Kinase Kinase Kinase	AT4G08470	28.866	1.70e-23	102

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TTK	Trre6g02249		Pkinase	3.3e-56	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre6g02249	K08866		-	gmx:100780144	952.199