LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre6g02248	ATGGATGGGAAGTCTAACCTTCCGATCAAGCCAGATTCTTCTTCCCCGGACTTCCTCCGCCACGTTCAAGCCGCCTTGAAGCGTCACCGTCCTCTCGGTCAATCCAACAATATCATTAGACCAAGACGCACCATTCTTCTTCAACCTCAACATACAAACAACGATTCACTTCAAACTACCACCACTGTTGTTAACCCTTCTCAACATGCAAACAAACTTCAACAGGGGGCCAATGATGAAAAGGCCATTGAGTTGGAGAATTTGTCTTCTTATATGGGTTCACTTGGATTCACAGAAATGGAGTATGTTGAAGGCAATGAACCTGAAGATTCAATTGGAATCAACGACGATGATAATGATGATTCAAAGCAACCCAAAGTTCAGCAGGTTGAGACTGATTTTAGTTTGAGATCCGATGGAGGAGTGCCGAGGAGAACTACTGTTACGCGGGATAATTTGCAGCAGTTTAGAAACTTTCTAAGTCAGCCAGCGACGCAATCTTCGGTGGTGGGACCTTGTGCTACGACTACGTCGGTTCATTCAACTTCAGCTCCCATGATGAATTCAACCACCCGTTTGCATCGAGAAAGTGGCTCGCGCGTGGTTGCTGAACCTTTGGGAGAAATTGGTGTTTATCCTATAGCTGAAAGAGTTATGGAATCAGAAAATACAGATGCTTCTACGGAAAAAGATGATAAAATGTTAGTTGATAAGGCTGCAATTTCGGTGCAAGCTTCTGATTCTTGTGTGGATGCTGAGTTAGCATCTAGAGAGTGTGACCAATCGAAGGAGCAACAAGAATGCTTGTTGAAAGAAACCGACAATTCAAAATATGCTTCTTGTGGTGGTGACAAGATGACCAAAATGAAAGAGCCTGCAGATGTTGCCAATGTACACCGCCTGGTGCCCAAAACATCTTTGGATGTGAAGTCTGAATCTTCTAAATTAGAAAGACGAGAGAAGGCTGCGAGTAGTAAAGGTTCGTCAGTAGCTAAGAAAAGGTCCTATGACCCTGACTTGTTTTTTAAGGTTAATGGCAAGCTTTATCAACGTCTTGGCAAGATAGGTAGTGGTGGAAGTAGTGAGGTGCACAAGGTTATTTCATCAGATTGTAGGATATATGCACTTAAGAAGATCAAACTCAGGGGTCGTGATTATGCTACTGCATACGGGTTTTGTCAAGAGATTGAGTATCTAAATAGGCTGAGAGGAAAGGATAATATTATTCAGCTTATAGATTATGAGGTGACTGACAAGGCTTTGCTTGAAGAAGTTATGAAAGGCTCTCTTAGTAATAAGGATGGCCGAGTCAAAGATGATGGATATATATACATGGTTCTTGAATACGGTGAAATTGATTTAGCTCACATGTTGTCCCAGAAGTGGAAGGAACTGGATGGATCCAAAGAGACCATAGACGAGAACTGGCTTCGGTTTTATTGGCAGCAAATTCTTCAAGCTGTCAATACAATTCACGAGGAACGTATTGTGCACTCTGACTTGAAGCCTGCTAACTTCCTCCTCGTCAAGGGTTCCCTAAAACTGATTGACTTTGGCATCGCCAAAGCAATAATGAGTGATACTACTAATATCCAACGGGAATCACAGGTGGGTACTCTGAGTTACATGTCTCCGGAAGCATTTATGTGCAATGAGACTGATGCAAACGGAAACATCATCAAGTGCGGTCGGCCATCAGATATCTGGTCTTTGGGATGCATCCTTTATCAAATGGTATATGGGAGAACCCCTTTTTCAGAATACAAGACATTCTGGGCCAAATTTAAAGTTATAACAGATCCAAATCATGAAATTACGTACGAACCACTTTCAAATCCATGGCTAGTGGATCTTATGAAGAGGTGTCTAGCATGGGATCGCAATCAAAGGTGGAGAATTCCTCAGTTACTGCAACATCCTTTTCTTGCACCTCATGTACTACCTCACCCATGTTTGTCCCAAGACCATAGCTGTAAATTTGTACAACTTATCACTGAAACTTGTACATATGACCCTGAAGCATCCCAACTTTGTCATCAGCTCCAACGTCTACTTGTTGATCCACTCGGCTTAACAACCCACTCACTAAATTCACAAGATCAACAAAGAACACTGTTGTCCAAAATGTCTGAACTCTGTATTCAACTGCGGGAACGTTTGGTAGATACTGATAGGGAACCTTTGGTAGATACTGATATCAAGTAA	2205	0.4231	MDGKSNLPIKPDSSSPDFLRHVQAALKRHRPLGQSNNIIRPRRTILLQPQHTNNDSLQTTTTVVNPSQHANKLQQGANDEKAIELENLSSYMGSLGFTEMEYVEGNEPEDSIGINDDDNDDSKQPKVQQVETDFSLRSDGGVPRRTTVTRDNLQQFRNFLSQPATQSSVVGPCATTTSVHSTSAPMMNSTTRLHRESGSRVVAEPLGEIGVYPIAERVMESENTDASTEKDDKMLVDKAAISVQASDSCVDAELASRECDQSKEQQECLLKETDNSKYASCGGDKMTKMKEPADVANVHRLVPKTSLDVKSESSKLERREKAASSKGSSVAKKRSYDPDLFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCRIYALKKIKLRGRDYATAYGFCQEIEYLNRLRGKDNIIQLIDYEVTDKALLEEVMKGSLSNKDGRVKDDGYIYMVLEYGEIDLAHMLSQKWKELDGSKETIDENWLRFYWQQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRESQVGTLSYMSPEAFMCNETDANGNIIKCGRPSDIWSLGCILYQMVYGRTPFSEYKTFWAKFKVITDPNHEITYEPLSNPWLVDLMKRCLAWDRNQRWRIPQLLQHPFLAPHVLPHPCLSQDHSCKFVQLITETCTYDPEASQLCHQLQRLLVDPLGLTTHSLNSQDQQRTLLSKMSELCIQLRERLVDTDREPLVDTDIK	734

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre6g02248	734	ProSiteProfiles	Protein kinase domain profile.	349	642	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre6g02248	734	Pfam	Protein kinase domain	349	642	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre6g02248	734	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	496	508	IPR008271	GO:0004672\|GO:0006468
	Trre6g02248	734	MobiDBLite	consensus disorder prediction	309	330	-	-
	Trre6g02248	734	SMART	serkin_6	349	642	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre6g02248	734	SUPERFAMILY	Protein kinase-like (PK-like)	342	665	IPR011009	-
	Trre6g02248	734	Coils	Coil	252	272	-	-
	Trre6g02248	734	FunFam	serine/threonine-protein kinase mph1 isoform X2	342	429	-	-
	Trre6g02248	734	CDD	PKc_Mps1	347	642	IPR027084	-
	Trre6g02248	734	Gene3D	Transferase(Phosphotransferase) domain 1	463	647	-	-
	Trre6g02248	734	Gene3D	Phosphorylase Kinase; domain 1	342	429	-	-
	Trre6g02248	734	PANTHER	MIXED LINEAGE PROTEIN KINASE	46	675	-	-
	Trre6g02248	734	MobiDBLite	consensus disorder prediction	167	198	-	-
	Trre6g02248	734	MobiDBLite	consensus disorder prediction	167	196	-	-
	Trre6g02248	734	MobiDBLite	consensus disorder prediction	310	330	-	-
	Trre6g02248	734	ProSitePatterns	Protein kinases ATP-binding region signature.	355	377	IPR017441	GO:0005524
	Trre6g02248	734	MobiDBLite	consensus disorder prediction	107	128	-	-
	Trre6g02248	734	FunFam	serine/threonine-protein kinase mph1 isoform X1	463	645	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre6g02248	Trre-Chr6	19349725	19353590	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre6g02248	355	642	MAP Kinase Kinase Kinase	AT4G08470	28.866	1.84e-23	102

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TTK	Trre6g02248		Pkinase	3.5e-56	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre6g02248	K08866		-	gmx:100780144	988.793