Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02247 ATGGATGGGAAGTCTAACCTTCCGATCAAGCCAGATTCTTCTTCCCCGGACTTCCTCCGCCACGTTCAAGCCGCCTTGAAGCGTCACCGTCCTCTCGATACAGGTCAATCCAACAATATCATTAGACCAAGACGCACCATTCTTCTTCAACCTCAACATACAAACAACGATTCACTTCAAACTACCACCACTGTTGTTAACCCTTCTCAACATGCAAACAAACTTCAACAGGGGGCCAATGATGAAAAGGCCATTGAGTTGGAGAATTTGTCTTCTTATATGGGTTCACTTGGATTCACAGAAATGGAGTATGTTGAAGGCAATGAACCTGAAGATTCAATTGGAATCAACGACGATGATAATGATGATTCAAAGCAACCCAAAGTTCAGCAGGTTGAGACTGATTTTAGTTTGAGATCCGATGGAGGAGTGCCGAGGAGAACTACTGTTACGCGGGATAATTTGCAGCAGTTTAGAAACTTTCTAAGTCAGCCAGCGACGCAATCTTCGGTGGTGGGACCTTGTGCTACGACTACGTCGGTTCATTCAACTTCAGCTCCCATGATGAATTCAACCACCCGTTTGCATCGAGAAAGTGGCTCGCGCGTGGTTGCTGAACCTTTGGGAGAAATTGGTGTTTATCCTATAGCTGAAAGAGTTATGGAATCAGAAAATACAGATGCTTCTACGGAAAAAGATGATAAAATGTTAGTTGATAAGGCTGCAATTTCGGTGCAAGCTTCTGATTCTTGTGTGGATGCTGAGTTAGCATCTAGAGAGTGTGACCAATCGAAGGAGCAACAAGAATGCTTGTTGAAAGAAACCGACAATTCAAAATATGCTTCTTGTGGTGGTGACAAGATGACCAAAATGAAAGAGCCTGCAGATGTTGCCAATGTACACCGCCTGGTGCCCAAAACATCTTTGGATGTGAAGTCTGAATCTTCTAAATTAGAAAGACGAGAGAAGGCTGCGAGTAGTAAAGGTTCGTCAGTAGCTAAGAAAAGGTCCTATGACCCTGACTTGTTTTTTAAGGTTAATGGCAAGCTTTATCAACGTCTTGGCAAGATAGGTAGTGGTGGAAGTAGTGAGGTGCACAAGGTTATTTCATCAGATTGTAGGATATATGCACTTAAGAAGATCAAACTCAGGGGTCGTGATTATGCTACTGCATACGGGTTTTGTCAAGAGATTGAGTATCTAAATAGGCTGAGAGGAAAGGATAATATTATTCAGCTTATAGATTATGAGGTGACTGACAAGGCTTTGCTTGAAGAAGTTATGAAAGGCTCTCTTAGTAATAAGGATGGCCGAGTCAAAGATGATGGATATATATACATGGTTCTTGAATACGGTGAAATTGATTTAGCTCACATGTTGTCCCAGAAGTGGAAGGAACTGGATGGATCCAAAGAGACCATAGACGAGAACTGGCTTCGGTTTTATTGGCAGCAAATTCTTCAAGCTGTCAATACAATTCACGAGGAACGTATTGTGCACTCTGACTTGAAGCCTGCTAACTTCCTCCTCGTCAAGGGTTCCCTAAAACTGATTGACTTTGGCATCGCCAAAGCAATAATGAGTGATACTACTAATATCCAACGGGAATCACAGGTGGGTACTCTGAGTTACATGTCTCCGGAAGCATTTATGTGCAATGAGACTGATGCAAACGGAAACATCATCAAGTGCGGTCGGCCATCAGATATCTGGTCTTTGGGATGCATCCTTTATCAAATGGTATATGGGAGAACCCCTTTTTCAGAATACAAGACATTCTGGGCCAAATTTAAAGTTATAACAGATCCAAATCATGAAATTACGTACGAACCACTTTCAAATCCATGGCTAGTGGATCTTATGAAGAGGTGTCTAGCATGGGATCGCAATCAAAGGTGGAGAATTCCTCAGTTACTGCAACATCCTTTTCTTGCACCTCATGTACTACCTCACCCATGTTTGTCCCAAGACCATAGCTGTAAATTTGTACAACTTATCACTGAAACTTGTACATATGACCCTGAAGCATCCCAACTTTGTCATCAGCTCCAACGTCTACTTGTTGATCCACTCGGCTTAACAACCCACTCACTAAATTCACAAGATCAACAAAGAACACTGTTGTCCAAAATGTCTGAACTCTGTATTCAACTGCGGGAACGTTTGGTAGATACTGATAGGGAACCTTTGGTAGATACTGATATCAAGTAA 2211 0.4229 MDGKSNLPIKPDSSSPDFLRHVQAALKRHRPLDTGQSNNIIRPRRTILLQPQHTNNDSLQTTTTVVNPSQHANKLQQGANDEKAIELENLSSYMGSLGFTEMEYVEGNEPEDSIGINDDDNDDSKQPKVQQVETDFSLRSDGGVPRRTTVTRDNLQQFRNFLSQPATQSSVVGPCATTTSVHSTSAPMMNSTTRLHRESGSRVVAEPLGEIGVYPIAERVMESENTDASTEKDDKMLVDKAAISVQASDSCVDAELASRECDQSKEQQECLLKETDNSKYASCGGDKMTKMKEPADVANVHRLVPKTSLDVKSESSKLERREKAASSKGSSVAKKRSYDPDLFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCRIYALKKIKLRGRDYATAYGFCQEIEYLNRLRGKDNIIQLIDYEVTDKALLEEVMKGSLSNKDGRVKDDGYIYMVLEYGEIDLAHMLSQKWKELDGSKETIDENWLRFYWQQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRESQVGTLSYMSPEAFMCNETDANGNIIKCGRPSDIWSLGCILYQMVYGRTPFSEYKTFWAKFKVITDPNHEITYEPLSNPWLVDLMKRCLAWDRNQRWRIPQLLQHPFLAPHVLPHPCLSQDHSCKFVQLITETCTYDPEASQLCHQLQRLLVDPLGLTTHSLNSQDQQRTLLSKMSELCIQLRERLVDTDREPLVDTDIK 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02247 736 ProSitePatterns Protein kinases ATP-binding region signature. 357 379 IPR017441 GO:0005524
Trre6g02247 736 Gene3D Phosphorylase Kinase; domain 1 344 431 - -
Trre6g02247 736 ProSiteProfiles Protein kinase domain profile. 351 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g02247 736 ProSitePatterns Serine/Threonine protein kinases active-site signature. 498 510 IPR008271 GO:0004672|GO:0006468
Trre6g02247 736 CDD PKc_Mps1 349 644 IPR027084 -
Trre6g02247 736 SMART serkin_6 351 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g02247 736 FunFam serine/threonine-protein kinase mph1 isoform X1 465 647 - -
Trre6g02247 736 Pfam Protein kinase domain 351 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g02247 736 MobiDBLite consensus disorder prediction 169 200 - -
Trre6g02247 736 MobiDBLite consensus disorder prediction 169 198 - -
Trre6g02247 736 Gene3D Transferase(Phosphotransferase) domain 1 465 649 - -
Trre6g02247 736 MobiDBLite consensus disorder prediction 311 332 - -
Trre6g02247 736 SUPERFAMILY Protein kinase-like (PK-like) 344 667 IPR011009 -
Trre6g02247 736 MobiDBLite consensus disorder prediction 312 332 - -
Trre6g02247 736 Coils Coil 254 274 - -
Trre6g02247 736 FunFam serine/threonine-protein kinase mph1 isoform X2 344 431 - -
Trre6g02247 736 PANTHER MIXED LINEAGE PROTEIN KINASE 47 677 - -
Trre6g02247 736 MobiDBLite consensus disorder prediction 109 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02247 Trre-Chr6 19349725 19353590 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02247 357 644 MAP Kinase Kinase Kinase AT4G08470 28.866 1.82e-23 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TTK Trre6g02247 Pkinase 3.5e-56 CL0016