Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02230 ATGTACATGGAAATGGACATGGACATGGATGCTATCCATGATCTCGACTTCTCCGGACACAGCACCCTCACAAATACCCCTTCTTCCGATGACGATTATGGTTGCAATTGGAACCAATGGTCTCCCATAGTTAACTGGGATACTTTCACTGGCACCCAGGATGGTTTCCATCACCTGATGGACACCATCATCGATGACAGAACCACCCTTCTCGACCAGCTCAGCCCAACCACAACCACCACCACCACAACCACTGATGAGGAAGAAGAAGAAACGGAAACAACAACAACAACCACCACCACCAGCACAACCACAACAACAACAACAGAAAAAGCACAAGCGGTTGACGATGATATAAAAGGGCTAAAACTAGTGCACCTATTGATGGCTGGCGCGGAAGCCTTAACCGGTTCAACAAAAAACCGCGAGTTAGCTCGAGTGATATTGGTTCGGCTCAAGGAGTTGGTTTCAAACCATGCTCACGGCTCTAACATGGAAAGACTCGCCGCTTATTTCACTGATGCCCTTCAAGGTTTACTAGAAGGCGCTGGGGGTGCACACAATAACCACCACCACCACAACAACAACAACAAACATTACCTCACAAACAGTGGGCCCCATGACAACCAAAACGACACACTCACTGCTTTCCAACTACTTCAAGACATGTCACCTTACGTCAAATTCGGCCACTTCACAGCCAATCAAGCCATAATCGAAGCCGTGGCCCACGAACGCCGCGTCCATATCATCGATTACGACATCATGGAAGGGGTCCAATGGGCCTCATTAATCCAATCTCTAGCTTCCAACAACAACAGTCCACATCTCCGGATAACAGCATTATCGCGGACAGGAGCAGGAAGGAGATCAATCGCCACCGTACAAGAAACCGGCCGGCGATTAACCTCCTTCGCTGCTTCTCTCGGTCAGCCTTTTTCGTTTCATCACTGCAGATTAGACACCGATGAAACGTTCCGTCCTTCTACGTTAAAGCTTGTTCGTGGAGAGGCTTTGGTTTTCAACTGCATGCTGAATTTGCCTCATCTTAGTTACCGTGCACCTGATTCGGTTGCATCGTTTTTGAACGGAGCAAAAGCGTTGAATCCAAAGCTTGTAACGTTGGTTGAAGAAGAAGTTGGATCTGTTGTTGGTGGGTTTGTGGAAAGGTTCATGGACTCACTTCATCATTACTCAGCGGTGTTTGATTCATTGGAGGCTGGGTTTCCGATGCAGAATCGGGCTCGGGCTTTGGTGGAGCGGGTATTTTTTGGGCCGAGGATAGCGGGCTCGTTGGGCCGTATTTACAGAACGGGTGGAGAGGAGGAGAGAAAATCGTGGGGGGAGTGGTTAGGTGCGGCAGGGTTTATGGGAGTTCCGGTGAGCTTTGCGAATCATTGTCAAGCGAAGCTTTTGTTGGGTCTTTTTAATGACGGGTATAGAGTTGAAGAGGTGGGTGTAGGTAGTAATAAGTTGGTTTTGGATTGGAAATCACGGCGTTTGCTTTCTGCTTCACTATGGACTTGTTCTTCTTCAGATTCTGATTTATAG 1551 0.4823 MYMEMDMDMDAIHDLDFSGHSTLTNTPSSDDDYGCNWNQWSPIVNWDTFTGTQDGFHHLMDTIIDDRTTLLDQLSPTTTTTTTTTDEEEEETETTTTTTTTSTTTTTTTEKAQAVDDDIKGLKLVHLLMAGAEALTGSTKNRELARVILVRLKELVSNHAHGSNMERLAAYFTDALQGLLEGAGGAHNNHHHHNNNNKHYLTNSGPHDNQNDTLTAFQLLQDMSPYVKFGHFTANQAIIEAVAHERRVHIIDYDIMEGVQWASLIQSLASNNNSPHLRITALSRTGAGRRSIATVQETGRRLTSFAASLGQPFSFHHCRLDTDETFRPSTLKLVRGEALVFNCMLNLPHLSYRAPDSVASFLNGAKALNPKLVTLVEEEVGSVVGGFVERFMDSLHHYSAVFDSLEAGFPMQNRARALVERVFFGPRIAGSLGRIYRTGGEEERKSWGEWLGAAGFMGVPVSFANHCQAKLLLGLFNDGYRVEEVGVGSNKLVLDWKSRRLLSASLWTCSSSDSDL 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02230 516 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 96 503 IPR005202 -
Trre6g02230 516 Pfam GRAS domain family 124 508 IPR005202 -
Trre6g02230 516 MobiDBLite consensus disorder prediction 95 109 - -
Trre6g02230 516 MobiDBLite consensus disorder prediction 74 109 - -
Trre6g02230 516 ProSiteProfiles GRAS family profile. 115 508 IPR005202 -
Trre6g02230 516 MobiDBLite consensus disorder prediction 183 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02230 Trre-Chr6 19183247 19184797 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02230 82 511 GRAS Transcription Factor Family AT3G54220 34.989 5.75e-53 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre6g02230 GRAS 2.9e-99 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02230 - - tpra:123896871 881.322