Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02219 ATGTCTTTGAGTCCTCCAAGAGAAAGAATCAACGCCCAACGTAGAAACTTCCAACTCTACTGGTGCTTCCAATGCAACCGTACCGTCCGCGTCGCACCATATAACTCCTCCGAATTAATATGTCCACGTTGCTTCGGCCAATTCATATGCGAAATCAACATACCAAGACCACAACTCGTGGTAGACTTCACCGCACACGATCCTTCCCCAGAAGCGCGTTTGTTAGAAGCACTTTCCATAATGCTCGATCCACCCATCCGTCGCTTTAACACTGAAACCCAAACACGACGCCCACGTCGTTCCACACAACAAGTTCCCGTGCACCGTCACACAGGAGATAATCATCACAATCCTAACCAAACACAACCTGAACCCGAACCCGGTATCCAACACCGTCCACGTACATGGGTAATTCTTCAACCCATTGATCCATCAAATTCAAACACATTTCAACCGGTGATTAATCCACGTGGACGACAAGGACCGATTCCACGTGGCGTTGATTCTAGAGATTACTTTTTCGGTCCTGGATTTAACGAACTAATAGATCAGATAACAGAAAACGACCGGCAAGGACCACCGCCGGTACCGGAAAGAGGTATAAACGCGATTCCGACGGTGAAAATCGAAAGCAAAAATCTGAAAGAGAATTCACATTGTCCTGTTTGTCAAGAAGAATTTGAAATTGGAGGTGAAGCGAGGGAACTTCCATGTAAACATATATATCATTCTGATTGTATTGTTCCTTGGCTTAGACTTCATAATTCTTGTCCAATTTGTCGTCAAGAGATTTCAGTTTCTTCTGAAGAAGATGAAGATGAGTGTGGTGAAGAAGGTTGTGGTGGTGGTGAAGGTAGGTTACGTAGGTGTTTGAGGTGGACTCGTCTTTCTTCTCTTTGGCCTTTTCAAGGAAGGTATCGGAGAGTTCATCCTCAAAGGGATAATGGTTCTGCTTCTTCTTCGACAATAAGGGATTCTAATCCAAGGCTGTTGTTGATCAGGATTTGCAGAAGACAAGTTGTCCTAGTTACGAGAATGCATTTTGCAGGAGAAAATGGTCTTGCTATTCAAAACAAACTAAAATGGCTTTTCAAGTTCCAATCAAGTTAA 1110 0.4387 MSLSPPRERINAQRRNFQLYWCFQCNRTVRVAPYNSSELICPRCFGQFICEINIPRPQLVVDFTAHDPSPEARLLEALSIMLDPPIRRFNTETQTRRPRRSTQQVPVHRHTGDNHHNPNQTQPEPEPGIQHRPRTWVILQPIDPSNSNTFQPVINPRGRQGPIPRGVDSRDYFFGPGFNELIDQITENDRQGPPPVPERGINAIPTVKIESKNLKENSHCPVCQEEFEIGGEARELPCKHIYHSDCIVPWLRLHNSCPICRQEISVSSEEDEDECGEEGCGGGEGRLRRCLRWTRLSSLWPFQGRYRRVHPQRDNGSASSSTIRDSNPRLLLIRICRRQVVLVTRMHFAGENGLAIQNKLKWLFKFQSS 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02219 369 SMART ring_2 220 260 IPR001841 -
Trre6g02219 369 FunFam E3 ubiquitin-protein ligase RING1-like 184 267 - -
Trre6g02219 369 Pfam Ring finger domain 219 261 IPR001841 -
Trre6g02219 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 267 IPR013083 -
Trre6g02219 369 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 115 264 - -
Trre6g02219 369 MobiDBLite consensus disorder prediction 88 130 - -
Trre6g02219 369 Pfam zinc-ribbon 18 52 IPR039525 GO:0061630
Trre6g02219 369 ProSiteProfiles Zinc finger RING-type profile. 220 261 IPR001841 -
Trre6g02219 369 SUPERFAMILY RING/U-box 201 267 - -
Trre6g02219 369 CDD RING-H2_RNF126-like 220 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02219 Trre-Chr6 19073150 19075047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02219 192 314 C3H Transcription Factor Family AT1G68180 42.742 5.89e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02219 K11982 - gmx:100787399 387.497