Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02217 ATGGATCAATTGGAAAAGATAAATCCAAAACATGTATCTGCTTGGAAGATGAAGAAGTTAATTAATATGGTTTGTCAGGAGACTCTTACTACAATGGATGAGTATGCGACACAAATCAAAAGTGAAGATGATGTCAAAATAGCTGCTCAGAAAATCTTTGAAAATGTTGCTAGGCACGACGACAAGTTATTATTCATTAATACAATATTTGAGGCAATCATGTTCATATTTTTCATGCACCCATATGATGTGGGAGATAGATGTCAAATTGATGAAATTAAGATGGTTGTAGAAGAAATGAATATATTCACCACAACATTTTTGGGCTCTGAGAATCGAAAGATAATTATCCCCAACAATATTCTTGCAACAAAGGTAATTCAAAATTTCCTCTGTAGTCCAGACATGAAAGGTTACATTGACTTATTCATCCATGTAGCTACATCTAATAATAAAATTTAA 462 0.3225 MDQLEKINPKHVSAWKMKKLINMVCQETLTTMDEYATQIKSEDDVKIAAQKIFENVARHDDKLLFINTIFEAIMFIFFMHPYDVGDRCQIDEIKMVVEEMNIFTTTFLGSENRKIIIPNNILATKVIQNFLCSPDMKGYIDLFIHVATSNNKI 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02217 153 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 1 62 IPR016688 -
Trre6g02217 153 SUPERFAMILY Sm-like ribonucleoproteins 71 130 IPR010920 -
Trre6g02217 153 Gene3D - 81 130 IPR023408 -
Trre6g02217 153 FunFam Predicted mechanosensitive ion channel 81 130 - -
Trre6g02217 153 Pfam Mechanosensitive ion channel 74 149 IPR006685 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02217 Trre-Chr6 19064795 19065807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02217 1 66 Mechanosensitive Ion Channel Family AT1G53470 44.156 7.38e-15 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02217 K22048 - csv:101207426 116.316