Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02206 ATGGTTAAGTCAGAGATTAACACCAAGATCAAAACAGAACCATTAACAAAACCAAATATTAGTATCTCAGATAGTAGCAAGAAAAAGAAGTACAAAGGAGTAAGAATGAGAAGTTGGGGTTCTTGGGTTTCTGAGATTAGAGCACCAAATCAAAAAACAAGAATTTGGTTAGGTTCTTATTCAACTCCAGAAGCAGCTGCTAGAGCTTATGATGCTGCACTTCTTTGTCTTAAAGGTTCTTCCTCTGCTTCAAATCTCAATTTCCCTCTAAACTCTTGTTCACATTATTGTAATATTGATAATCCTCAAGATATGTCTCCAAAATCAATTCAAAGAGTTGCTGCTGCTGCTGCAAATAGTTTCATTGACAACAATAATGTTAATGTCCCTTCAACATCTTCATCATTGGTTTCATCTCCATCATCATCAATGGCTTCTTCTGATGATGTTTCTTCATTTATAACATCTTATGATAAAGCTAATGATGGATCAATGGATATGATATCAGAAACTAATTGGTATGGATTAGAAGGTTTACAATCTCCTAAATATGTTGATCATATGTTGTTAAGTGCTTCTTTCTTTGATATTGATTCTTTATCACATTTGCTTAATGATGATGTGTATGAAGAAAGTGATATTAGATTGTGGAACTTCAGCTGA 663 0.3333 MVKSEINTKIKTEPLTKPNISISDSSKKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTPEAAARAYDAALLCLKGSSSASNLNFPLNSCSHYCNIDNPQDMSPKSIQRVAAAAANSFIDNNNVNVPSTSSSLVSSPSSSMASSDDVSSFITSYDKANDGSMDMISETNWYGLEGLQSPKYVDHMLLSASFFDIDSLSHLLNDDVYEESDIRLWNFS 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02206 220 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Trre6g02206 220 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Trre6g02206 220 Pfam AP2 domain 30 79 IPR001471 GO:0003700|GO:0006355
Trre6g02206 220 Gene3D AP2/ERF domain 29 91 IPR036955 GO:0003700|GO:0006355
Trre6g02206 220 CDD AP2 31 89 IPR001471 GO:0003700|GO:0006355
Trre6g02206 220 SUPERFAMILY DNA-binding domain 30 89 IPR016177 GO:0003677
Trre6g02206 220 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 20 160 - -
Trre6g02206 220 ProSiteProfiles AP2/ERF domain profile. 30 89 IPR001471 GO:0003700|GO:0006355
Trre6g02206 220 SMART rav1_2 30 95 IPR001471 GO:0003700|GO:0006355
Trre6g02206 220 FunFam ethylene-responsive transcription factor ERF014-like 29 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02206 Trre-Chr6 18701033 18701695 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02206 31 219 AP2-EREBP Transcription Factor Family AT1G21910 51.741 9.81e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre6g02206 AP2 2.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02206 - - cam:101495993 244.973