Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02201 ATGGAAAAAATAGGTTCTACTAGTTTTGGCAATAAAATGAGTAAGGCAAGGCCTTATGTGTTAACGGTGGGATTGCAATTTGGGTTTGCAGGAGCATACATATTCTCAATGGCTAGTTTTAACCTTGGAATGAATCGTTTTGTGTTCATTGTTTATCGTAATGTTATTGCTGCAATTGCCCTTGCTCCTTTTGCATTCATCTTTGAAAGGAAAATTAGGCCAAAGATGACAATCTCAGTCTTTTTGCGGATAATGGCGCTCGCTTTTTTGGAGCCAGTGATTGATCAAGGATTCACTTTCTTGGGAATGCAATATACATCAGCTTCATTTGCATCTGCTTTGATGAATGCTGTGCCTTCTGTTACCTTTGTGTTAGCCGTAATTTTCAGGATAGAGCGTGTAAATTTGAAGCAGATACGAAGCATAGCTAAGGTGATAGGAACGTTAGTAACATTTGCGGGAGCTTTAATGATGATACTTTATAAAGGACCACCAATCCATCTTTTTTATTCTCCAAACACGGCCCATCAAGATAGTCACAACACGCAAAATCTCAAACATTGGGTTTCAGGAACACTCTTTCTATTATTGGGTTGTGTGGCTTGGTCATCCTTCTTCATTTTACAGTCGATAACATTGAAAAAGTATCCGGCTGAAATGTCGTTGTCGACCTTAATATGCTTAGTTGGTGCTTTAATGAGTAGTGTGGTGGCAATGGTGGCGGAGCGTCACTCTGGTGCCGGGGTTTGGGCTGTTGGTTGGGACTTTAGACTATATGGTCCTCTCTATACGGGAATAATCACCTCAGGAATAACATATTATGTGCAAGGGTTGGTATTGCAAAGCAGAGGCCCAGTATTTTATACAGCATTTAATCCTCTTTGTATGATCATCACTTGTGCTTTGGGCTCCTTCCTTTTCGCCGAGCAAATCCACTTGGGCAGTATCATCGGAGCCGTGATTATTGCAATCGGTCTTTATTCTGTGGTGTGGGGTAAAGCAAAAGACTATTCAACCACTACTACGCCAGAATCATCAGTTACAATGAAGCAAATTGAGGGACAACAACTTCCAATTACTTCATCTGATCATGTTTAA 1098 0.4062 MEKIGSTSFGNKMSKARPYVLTVGLQFGFAGAYIFSMASFNLGMNRFVFIVYRNVIAAIALAPFAFIFERKIRPKMTISVFLRIMALAFLEPVIDQGFTFLGMQYTSASFASALMNAVPSVTFVLAVIFRIERVNLKQIRSIAKVIGTLVTFAGALMMILYKGPPIHLFYSPNTAHQDSHNTQNLKHWVSGTLFLLLGCVAWSSFFILQSITLKKYPAEMSLSTLICLVGALMSSVVAMVAERHSGAGVWAVGWDFRLYGPLYTGIITSGITYYVQGLVLQSRGPVFYTAFNPLCMIITCALGSFLFAEQIHLGSIIGAVIIAIGLYSVVWGKAKDYSTTTTPESSVTMKQIEGQQLPITSSDHV 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02201 365 SUPERFAMILY Multidrug resistance efflux transporter EmrE 52 162 - -
Trre6g02201 365 Pfam EamA-like transporter family 27 159 IPR000620 GO:0016020
Trre6g02201 365 Pfam EamA-like transporter family 190 330 IPR000620 GO:0016020
Trre6g02201 365 SUPERFAMILY Multidrug resistance efflux transporter EmrE 254 334 - -
Trre6g02201 365 PANTHER WAT1-RELATED PROTEIN 18 337 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02201 Trre-Chr6 18644675 18650577 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02201 10 363 Nodulin-like Gene Family AT4G08300 50.559 8.03e-128 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02201 - - gmx:100812537 544.658