Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02200 ATGGGTGCTTGGTTAAGAAATGCAAAGCCATATCTACTACTCTTGGCTGTTCAATTTGGTTCTGCAGGTATGTTCATTTTTGCCATGGATGCCATCAAGAAAGGAATGAGCCATTATGTCTTCATCGTCTACCGGAATGCCATTGCCGCTGTAACTCTTGCTCCTTTCGCATTTCATCTTGAAAGGAAAATTAGGCCAAAGATGAGTCTTCGTGTGTTTTCAGAGATTATGGCACTGGCTTTCTTCGAAATAATACTTGATCAATGTTTTGCTCTGTTGGGGATGAAATTAACTTCTGCGTCGTTCCTGTCTGCTGTGATGAATTCTGCACCGTCCATTACTTTTGTTTTGGCAGTCATCCTAAAATTGGAGCACATGAAGATTAAGGAGGTAGCATGTCAAGCAAAGATAATTGGCACTGTAGTAACCTTTGGAGGAACATTGCTAATGGCTCTATACAAAGGTCCTGTTGTTAGTGTTGTGAGGTCATCAATTAGTCATGTTACTCGCCAGCCTGTGAGTGACTCCACCGGTGGTAATGACCGGTGGATCATAGGGACATGTTTCCTCCTCATTGGTTGTGCCGGCTTTTCTGCCTTTTACATATTGCAGGCTATAACGTTAAGAAAGTATCCAGCACCAATGTCTTTGGCTACTTGGGTTTGTTTTGTTGGCGCAATTCAAAGCTTTGTGGTTGCATTTTTCGCTGAGCGACACAACTCTCATGCTTGGTCTCTTGGTTGGGATACACGACTCTTTGCACCCGCTTATGCGGGGATTGTTACATCCGGAGTCCAATATTACATACAAGGTATGGTCATCAAATGTATGGGACCTGTTATTGTAACTGCTTTTAATCCCGTGCGTATGATCATCGTAACCGCCTTGGCGTGCATCATCCTCTCCGAGCAACTCTTTCTTGGAAGCATTATTGGAGCAATTGTGGTGGTTCTTGGGCTTTATCTAGTTGTGTGGGGAAAATCCAAGGAATACAAAGCTAGGAATGATATGCAACCATCACCTACAAAGGATAATACATTGCATGACCAACAACAACTACCAGTGACAGCTCCTACAAATGAAAATAGTGATAATAAAGCTAAATTGGTCATTCATGGTAAAGAAAATTGTCAAGGTTGTGACCAAAATTAA 1152 0.4219 MGAWLRNAKPYLLLLAVQFGSAGMFIFAMDAIKKGMSHYVFIVYRNAIAAVTLAPFAFHLERKIRPKMSLRVFSEIMALAFFEIILDQCFALLGMKLTSASFLSAVMNSAPSITFVLAVILKLEHMKIKEVACQAKIIGTVVTFGGTLLMALYKGPVVSVVRSSISHVTRQPVSDSTGGNDRWIIGTCFLLIGCAGFSAFYILQAITLRKYPAPMSLATWVCFVGAIQSFVVAFFAERHNSHAWSLGWDTRLFAPAYAGIVTSGVQYYIQGMVIKCMGPVIVTAFNPVRMIIVTALACIILSEQLFLGSIIGAIVVVLGLYLVVWGKSKEYKARNDMQPSPTKDNTLHDQQQLPVTAPTNENSDNKAKLVIHGKENCQGCDQN 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02200 383 PANTHER WAT1-RELATED PROTEIN 10 337 IPR030184 GO:0016020|GO:0022857
Trre6g02200 383 Pfam EamA-like transporter family 185 324 IPR000620 GO:0016020
Trre6g02200 383 Pfam EamA-like transporter family 9 150 IPR000620 GO:0016020
Trre6g02200 383 SUPERFAMILY Multidrug resistance efflux transporter EmrE 44 154 - -
Trre6g02200 383 SUPERFAMILY Multidrug resistance efflux transporter EmrE 220 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02200 Trre-Chr6 18629346 18631527 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02200 5 365 Nodulin-like Gene Family AT2G37460 42.424 6.22e-106 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02200 - - psat:127084085 619.002