Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02196 ATGGTACCAAAGAAAAGCATTATCGGCGAAGAAGAGAATCAAAGAAGAGTCTTCAATGAAGAAGACGAACTTATCATTTTGAAAGCGATTCTGGAGTTCATGTCCAAAACCGGAATGACTCCTTATTCAACTGATTTTCACACTTTTGTGAAAAATAAAATTCGTGGTAAAATAATTGTCGAACAATTGAAAAGAAAGATTCGCGGTTTTAAGGGAAAGTATGGAAAAGGTGAGACATTCACTAAAACTCGTGAAAAGAAGACTCAAGACTAA 273 0.348 MVPKKSIIGEEENQRRVFNEEDELIILKAILEFMSKTGMTPYSTDFHTFVKNKIRGKIIVEQLKRKIRGFKGKYGKGETFTKTREKKTQD 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02196 90 Pfam Protein of unknown function, DUF573 15 85 IPR007592 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02196 Trre-Chr6 18577852 18578124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02196 15 88 GeBP Transcription Factor Family AT1G61730 33.333 3.25e-09 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Trre6g02196 DUF573 3.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02196 - - mtr:11424230 75.8701