Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02191 ATGGTTGGTCCCGTCACGGATCTCATTCCCTCCGACAATCCCGCCACTCCGCCGGTCCGTAATGTCCGCCGGAGGTTGGTTCAATCAACGCTCTTCCCTCACAAGCCACCACAACCCCGCAACAAACCAGAGGAAAACGATGAAAGCAGTGACGAACATGATGAGGATTACTGCGACACGAAGAAGCGCAGGAAGAGAAAATCCAAAGGAAAAATCACTCCCGTAAACAAAGGTTCCAAGAGTGCCACACCAAAGAAAAATGCCAGTGGAAAGAAGCAGAGTGATGGAAAAACCTCTATAGCTAATGCAATTATGGGGTCAACTTCGCGGAATGTTTTGTCTGATTTCGATAAGGTTGTTATACCTAAGCCTGATTTGCGGTTAGAGGCAAAATTGTCAGCTGAGGAAAATTCAAGGATGTTTGCAGGACGGCAAGTACATCCATTTTTTTCATCGTGTAAAGCGGGGAAGAAAGTTCAAGAGCTGTCTGAACCAGGAAATGATGTACTCAAAGCTAAGAGTGGGAATGAAAGCATTACCTGTGGTCCTATTCATGTTTTTGAAAATATCAAGGATGATACCTCATCCCTAGACTGGAGAAACTGGACGTTTTTGGAAAATTCCACCTATGTGAACAGTGGTTCAGAAAGTTCAAATTCATCTGTTTTGGGGGCTTCTGTTGGATGCTTAAATTTTGACAAGCTTCTTAGTACCTTGGATCCAGTGAGAGCTTCAAGTTCTCAGAATGCCTCAAATTCTTTGGATATGTTTTCTACATGTCCAGAAAATATGCAAGAAACATCACTGTCAAACTCAACTTTACCAGAGGAACAAACGACAAGTGCTCCGATGCCAAAAGTTGCTAAAGTGGACTTGGAGGTGGATGAATCTGGTACATCTTCTGTGGAAGCTAGCTATTTTAGAAAGTCACATACTGGTGAGCCGCTGAGTAGATTTCTTCAAGAAAGTCTGAGGTCATACTATATTGGCTGCGAGGATAAGGCAGAAGGCAGCTTATGGACATACAAATACAAGCCAACTAAGGCCGTTGAGGTATGTGGTAATGATGAAGCTGTGAATTTCTTGAGTGACTGGCTACATCAGTGGCATGAAAGACGTTACAAACCCAGGAAGGATACGTCCAATAGGGATACAAGGGTCATTCATGACGACGATGATGATTATATCTGTTCTGACAGTGACTATGATTCGGAAGATATGAATGAGGAGGATTCCCTGCAGAATGTTCTTTTAGTTACAGGACCAATAGGGAGTGGCAAGTCTGCAGCAATCTATGCTTGTGCCCAAGAGCAAGGCTTTGATATATTAGAGCTCAATGCATCAGATTGTAGAAATGGGACTGTTGTCAAGCAATATTTTGGAGATACTCTTGGTTCACATGGGTTCAAAAGGTTATCAGAACACACTGTGAGTTCACAGAAGATGACTACAAAGTTGCCCCCAGCTCCTGCTCTGGTTAATGGTAAAGCTGCAGATGAGGTGAAGGACGGAGTAGTTGAACTAATAACCATATCTGATGATGAAGCTTGTAGCCCTGGTGAAATATCACAGAAGTTACATGGCAAGAATAATGTTGCATGTGATAAAGTCCAAACTTTGATTCTGGTTGAGGATGTGGACATACTTTTTCCTGAAGATCGTGGATGTATTGCTGCCATACAACAGATTGCCGGGACAGCAAGGGGGCCAATTATATTGACCAGCAATAGTGATAATCCCGGCCTTCCAGATAATTTTGATAGGCTTCATGTTTCATTCTCATTGCCAACACCAAAGGAGTTGCTTTGCCATTTGTACTCTGTTTGTCTCAGAGAAGGAGCCAGCATCCATCCTCTTCTACTGGAGAAGTTTATACAATCATGTGATGGAGACATCAGGAAAACCATTATGCATCTTCAGTTCTGGTTGCAGAGTAAAATATTTAGAAAAGATCTAAAAGCACATACAGGTTATGTCTCACTTCCATTTGATCTTGAGGTTGGTCATCAGATACTACCCAAGATAATGCCGTGGGATTTCCCCTCAGAGATATCCGAACTAATTGAGAACGAATTTGTCAAATCAGTAAATCAAATGGAAGATAATTCCAGTTTGCAAGGGTTAGTTGATGAAGAGCTTCTTCGCATAAATGAAAGTCAAAATGATTTAGATGAGCAGTATATGGAGACTGATTATATAAAAGCCAAGAAGGTGGAGATGATTCAGAGAAATGGGTCTATAACAGATTACTGTGAGCTTGAAATTCAATGCAAAGCTATTTCAGAGTTTTCCAATTCTTCTGGATCCCCTGTAGCATCCTATGTGCAAAATGGTCGAAGGAAACTTGTAGTAATGTCCTCTGATTCTGAAGAGGAGGATTCAAATAATGGATATCCTCAAGACACAGACGATGGAGCTAACAAGAGACATTCCATCAAAGGAAATAATGAATGTACCTCTGAGTTTCAGTTGAATGATAATTTCCCCAGCACATCTGTTCGTAAACTGGTTTGTTCTGAATTGGAGGATTCAGATGATGAATATGTTAAATATTCAGAAGCAGCTGATGTTACTTGCATAAATGATACATCTCAATCATTTGATATATCCTGTGTACCAGAATCAACGTTTGTTCCTGAGACTGCAATTGAAAATGGAACCGATACAATGTCTGGAGCGGTGTCTTCTGGCCACTGTCTAGAGGTTTCTATGAATAATGAGTTAAAACCGTCCACTTTAAGTGTTCGCAGGCGCTTAGCAAAATTGTCAGAAAATTCAGATATATTGATGGATACTGAAGTTCCAGATTCTTCTCAGAGAAATGCTCTACAAGATTTCCGAGATGAAAATATGGAAACTACAATTATCAAGGTGATGGATGAGTGCAGTCGTGTGGATTTCAAACTAAAGTCAACATTTGTTGAGTCCAGTCCATCATTGGAAACAGATGTGGTACAGAATTTGTGGGAAAAACTCCGACAAATGGATTTAAAACAGCATGCTATCTCAGAACAGCTAGGTGTTTCTCAAGTTGTTAAACTTGCTAGTGGCTTGAGCAATCTAATTTCAGAAGCGGACGTGTTTCATAATTACCAACATAAACATGATATTTTAGTGCCCCGAAGTTTCATTTCTAATGAAGCTACAACTAGTTGGTACAATGATGAAACAATGATGTCCAGCGTTGCTGTGCATGGGTTTTGTTTTTATGTTAAACTTATAGCAGATGTTGGATCAAAGCTAGGTTGTGCGAATAGGATTGATTTAACTTCGGAGGTGTTGGCTTCCACAACTAATACTATGGCATTGGGGAAATTATCCAGACTGGATATTGCCAAAAGCACAGTTATTTATACCGGGAAGGAATTAGAGTTGAACAACCCAATGGAGAGTGAAAATAAAGCATCTCTGTTTGAGGTTGTCCAATCCATTGTTCCTGCAAGAATATCCTTAGCATTGAAAGGTGATATCTTCAATGAATATCTATCCTCATTGCGCCAAATTTCAAGGTCAGAAGCAGTCCGTGTTTCGCAAGGTGTTGAAAAGAAGAGAAGAGGAAGGTCGCGGGGTGCTCAACATTATTTGAGCAGATGCACAGCGTTGTCTCCCGAAGATATAACGTTGGTCAGTGGTGATTTGTACAGGAATGTTTCCTCACAACATACAATTAATACGGAAAGTAATCTGCTATAG 3693 0.4075 MVGPVTDLIPSDNPATPPVRNVRRRLVQSTLFPHKPPQPRNKPEENDESSDEHDEDYCDTKKRRKRKSKGKITPVNKGSKSATPKKNASGKKQSDGKTSIANAIMGSTSRNVLSDFDKVVIPKPDLRLEAKLSAEENSRMFAGRQVHPFFSSCKAGKKVQELSEPGNDVLKAKSGNESITCGPIHVFENIKDDTSSLDWRNWTFLENSTYVNSGSESSNSSVLGASVGCLNFDKLLSTLDPVRASSSQNASNSLDMFSTCPENMQETSLSNSTLPEEQTTSAPMPKVAKVDLEVDESGTSSVEASYFRKSHTGEPLSRFLQESLRSYYIGCEDKAEGSLWTYKYKPTKAVEVCGNDEAVNFLSDWLHQWHERRYKPRKDTSNRDTRVIHDDDDDYICSDSDYDSEDMNEEDSLQNVLLVTGPIGSGKSAAIYACAQEQGFDILELNASDCRNGTVVKQYFGDTLGSHGFKRLSEHTVSSQKMTTKLPPAPALVNGKAADEVKDGVVELITISDDEACSPGEISQKLHGKNNVACDKVQTLILVEDVDILFPEDRGCIAAIQQIAGTARGPIILTSNSDNPGLPDNFDRLHVSFSLPTPKELLCHLYSVCLREGASIHPLLLEKFIQSCDGDIRKTIMHLQFWLQSKIFRKDLKAHTGYVSLPFDLEVGHQILPKIMPWDFPSEISELIENEFVKSVNQMEDNSSLQGLVDEELLRINESQNDLDEQYMETDYIKAKKVEMIQRNGSITDYCELEIQCKAISEFSNSSGSPVASYVQNGRRKLVVMSSDSEEEDSNNGYPQDTDDGANKRHSIKGNNECTSEFQLNDNFPSTSVRKLVCSELEDSDDEYVKYSEAADVTCINDTSQSFDISCVPESTFVPETAIENGTDTMSGAVSSGHCLEVSMNNELKPSTLSVRRRLAKLSENSDILMDTEVPDSSQRNALQDFRDENMETTIIKVMDECSRVDFKLKSTFVESSPSLETDVVQNLWEKLRQMDLKQHAISEQLGVSQVVKLASGLSNLISEADVFHNYQHKHDILVPRSFISNEATTSWYNDETMMSSVAVHGFCFYVKLIADVGSKLGCANRIDLTSEVLASTTNTMALGKLSRLDIAKSTVIYTGKELELNNPMESENKASLFEVVQSIVPARISLALKGDIFNEYLSSLRQISRSEAVRVSQGVEKKRRGRSRGAQHYLSRCTALSPEDITLVSGDLYRNVSSQHTINTESNLL 1230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02191 1230 MobiDBLite consensus disorder prediction 785 811 - -
Trre6g02191 1230 Gene3D - 596 658 - -
Trre6g02191 1230 MobiDBLite consensus disorder prediction 74 98 - -
Trre6g02191 1230 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 339 649 IPR027417 -
Trre6g02191 1230 Gene3D - 337 590 IPR027417 -
Trre6g02191 1230 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 13 1219 IPR004582 GO:0006281
Trre6g02191 1230 MobiDBLite consensus disorder prediction 1 98 - -
Trre6g02191 1230 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 598 659 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02191 Trre-Chr6 18543315 18552502 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02191 340 641 Core DNA Replication Machinery Family AT5G22010 22.540 3.82e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02191 K26118 - gmx:100784209 1513.82