LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre6g02190	ATGGTTGGTCCCGTCACGGATCTCATTCCCTCCGACAATCCCGCCACTCCGCCGGTCCGTAATGTCCGCCGGAGGTTGGTTCAATCAACGCTCTTCCCTCACAAGCCACCACAACCCCGCAACAAACCAGAGGAAAACGATGAAAGCAGTGACGAACATGATGAGGATTACTGCGACACGAAGAAGCGCAGGAAGAGAAAATCCAAAGGAAAAATCACTCCCGTAAACAAAGGTTCCAAGAGTGCCACACCAAAGAAAAATGCCAGTGGAAAGAAGCAGAGTGATGGAAAAACCTCTATAGCTAATGCAATTATGGGGTCAACTTCGCGGAATGTTTTGTCTGATTTCGATAAGGTTGTTATACCTAAGCCTGATTTGCGGTTAGAGGCAAAATTGTCAGCTGAGGAAAATTCAAGGATGTTTGCAGGACGGCAAGTACATCCATTTTTTTCATCGTGTAAAGCGGGGAAGAAAGTTCAAGAGCTGTCTGAACCAGGAAATGATGTACTCAAAGCTAAGAGTGGGAATGAAAGCATTACCTGTGGTCCTATTCATGTTTTTGAAAATATCAAGGATGATACCTCATCCCTAGACTGGAGAAACTGGACGTTTTTGGAAAATTCCACCTATGTGAACAGTGGTTCAGAAAGTTCAAATTCATCTGTTTTGGGGGCTTCTGTTGGATGCTTAAATTTTGACAAGCTTCTTAGTACCTTGGATCCAGTGAGAGCTTCAAGTTCTCAGAATGCCTCAAATTCTTTGGATATGTTTTCTACATGTCCAGAAAATATGCAAGAAACATCACTGTCAAACTCAACTTTACCAGAGGAACAAACGACAAGTGCTCCGATGCCAAAAGTTGCTAAAGTGGACTTGGAGGTGGATGAATCTGGTACATCTTCTGTGGAAGCTAGCTATTTTAGAAAGTCACATACTGGTGAGCCGCTGAGTAGATTTCTTCAAGAAAGTCTGAGGTCATACTATATTGGCTGCGAGGATAAGGCAGAAGGCAGCTTATGGACATACAAATACAAGCCAACTAAGGCCGTTGAGGTATGTGGTAATGATGAAGCTGTGAATTTCTTGAGTGACTGGCTACATCAGTGGCATGAAAGACGTTACAAACCCAGGAAGGATACGTCCAATAGGGATACAAGGGTCATTCATGACGACGATGATGATTATATCTGTTCTGACAGTGACTATGATTCGGAAGATATGAATGAGGAGGATTCCCTGCAGAATGTTCTTTTAGTTACAGGACCAATAGGGAGTGGCAAGTCTGCAGCAATCTATGCTTGTGCCCAAGAGCAAGGCTTTGATATATTAGAGCTCAATGCATCAGATTGTAGAAATGGGACTGTTGTCAAGCAATATTTTGGAGATACTCTTGGTTCACATGGGTTCAAAAGGTTATCAGAACACACTGTGAGTTCACAGAAGATGACTACAAAGTTGCCCCCAGCTCCTGCTCTGGTTAATGGTAAAGCTGCAGATGAGGTGAAGGACGGAGTAGTTGAACTAATAACCATATCTGATGATGAAGCTTGTAGCCCTGGTGAAATATCACAGAAGTTACATGGCAAGAATAATGTTGCATGTGATAAAGTCCAAACTTTGATTCTGGTTGAGGATGTGGACATACTTTTTCCTGAAGATCGTGGATGTATTGCTGCCATACAACAGATTGCCGGGACAGCAAGGGGGCCAATTATATTGACCAGCAATAGTGATAATCCCGGCCTTCCAGATAATTTTGATAGGCTTCATGTTTCATTCTCATTGCCAACACCAAAGGAGTTGCTTTGCCATTTGTACTCTGTTTGTCTCAGAGAAGGAGCCAGCATCCATCCTCTTCTACTGGAGAAGTTTATACAATCATGTGATGGAGACATCAGGAAAACCATTATGCATCTTCAGTTCTGGTTGCAGAGTAAAATATTTAGAAAAGATCTAAAAGCACATACAGGTTATGTCTCACTTCCATTTGATCTTGAGGTTGGTCATCAGATACTACCCAAGATAATGCCGTGGGATTTCCCCTCAGAGATATCCGAACTAATTGAGAACGAATTTGTCAAATCAGTAAATCAAATGGAAGATAATTCCAGTTTGCAAGGGTTAGTTGATGAAGAGCTTCTTCGCATAAATGAAAGTCAAAATGATTTAGATGAGCAGTATATGGAGACTGATTATATAAAAGCCAAGAAGGTGGAGATGATTCAGAGAAATGGGTCTATAACAGATTACTGTGAGCTTGAAATTCAATGCAAAGCTATTTCAGAGTTTTCCAATTCTTCTGGATCCCCTGTAGCATCCTATGTGCAAAATGGTCGAAGGAAACTTGTAGTAATGTCCTCTGATTCTGAAGAGGAGGATTCAAATAATGGATATCCTCAAGACACAGACGATGGAGCTAACAAGAGACATTCCATCAAAGGAAATAATGAATGTACCTCTGAGTTTCAGTTGAATGATAATTTCCCCAGCACATCTGTTCGTAAACTGGTTTGTTCTGAATTGGAGGATTCAGATGATGAATATGTTAAATATTCAGAAGCAGCTGATGTTACTTGCATAAATGATACATCTCAATCATTTGATATATCCTGTGTACCAGAATCAACGTTTGTTCCTGAGACTGCAATTGAAAATGGAACCGATACAATGTCTGGAGCGGTGTCTTCTGGCCACTGTCTAGAGGTTTCTATGAATAATGAGTTAAAACCGTCCACTTTAAGTGTTCGCAGGCGCTTAGCAAAATTGTCAGAAAATTCAGATATATTGATGGATACTGAAGTTCCAGATTCTTCTCAGAGAAATGCTCTACAAGATTTCCGAGATGAAAATATGGAAACTACAATTATCAAGGTGATGGATGAGTGCAGTCGTGTGGATTTCAAACTAAAGTCAACATTTGTTGAGTCCAGTCCATCATTGGAAACAGATGTGGTACAGAATTTGTGGGAAAAACTCCGACAAATGGATTTAAAACAGCATGCTATCTCAGAACAGCTAGGTGTTTCTCAAGTTGTTAAACTTGCTAGTGGCTTGAGCAATCTAATTTCAGAAGCGGACGTGTTTCATAATTACCAACATAAACATGATATTTTAGTGCCCCGAAGTTTCATTTCTAATGAAGCTACAACTAGTTGGTACAATGATGAAACAATGATGTCCAGCGTTGCTGTGCATGGGTTTTGTTTTTATGTTAAACTTATAGCAGATGTTGGATCAAAGCTAGGTTGTGCGAATAGGATTGATTTAACTTCGGAGGTGTTGGCTTCCACAACTAATACTATGGCATTGGGGAAATTATCCAGACTGGATATTGCCAAAAGCACAGTTATTTATACCGGGAAGGAATTAGAGTTGAACAACCCAATGGAGAGTGAAAATAAAGCATCTCTGTTTGAGGTTGTCCAATCCATTGTTCCTGCAAGAATATCCTTAGCATTGAAAGGTGATATCTTCAATGAATATCTATCCTCATTGCGCCAAATTTCAAGGTCAGAAGCAGTCCGTGTTTCGCAAGGTGTTGAAAAGAAGAGAAGAGGAAGGTCGCGGGGTGCTCAACATTATTTGAGCAGATGCACAGCGTTGTCTCCCGAAGATATAACGTTGGTCAGTGGTGATTTGTACAGGAATGTTTCCTCACAACATACAATTAATACGGAAACGAGCCTGGATCCTTTCCTTCACATTACGAAGAGATGGATGGGAGAGAATAGGGAATTGAAGGGTAAAAAGAGATAA	3756	0.4081	MVGPVTDLIPSDNPATPPVRNVRRRLVQSTLFPHKPPQPRNKPEENDESSDEHDEDYCDTKKRRKRKSKGKITPVNKGSKSATPKKNASGKKQSDGKTSIANAIMGSTSRNVLSDFDKVVIPKPDLRLEAKLSAEENSRMFAGRQVHPFFSSCKAGKKVQELSEPGNDVLKAKSGNESITCGPIHVFENIKDDTSSLDWRNWTFLENSTYVNSGSESSNSSVLGASVGCLNFDKLLSTLDPVRASSSQNASNSLDMFSTCPENMQETSLSNSTLPEEQTTSAPMPKVAKVDLEVDESGTSSVEASYFRKSHTGEPLSRFLQESLRSYYIGCEDKAEGSLWTYKYKPTKAVEVCGNDEAVNFLSDWLHQWHERRYKPRKDTSNRDTRVIHDDDDDYICSDSDYDSEDMNEEDSLQNVLLVTGPIGSGKSAAIYACAQEQGFDILELNASDCRNGTVVKQYFGDTLGSHGFKRLSEHTVSSQKMTTKLPPAPALVNGKAADEVKDGVVELITISDDEACSPGEISQKLHGKNNVACDKVQTLILVEDVDILFPEDRGCIAAIQQIAGTARGPIILTSNSDNPGLPDNFDRLHVSFSLPTPKELLCHLYSVCLREGASIHPLLLEKFIQSCDGDIRKTIMHLQFWLQSKIFRKDLKAHTGYVSLPFDLEVGHQILPKIMPWDFPSEISELIENEFVKSVNQMEDNSSLQGLVDEELLRINESQNDLDEQYMETDYIKAKKVEMIQRNGSITDYCELEIQCKAISEFSNSSGSPVASYVQNGRRKLVVMSSDSEEEDSNNGYPQDTDDGANKRHSIKGNNECTSEFQLNDNFPSTSVRKLVCSELEDSDDEYVKYSEAADVTCINDTSQSFDISCVPESTFVPETAIENGTDTMSGAVSSGHCLEVSMNNELKPSTLSVRRRLAKLSENSDILMDTEVPDSSQRNALQDFRDENMETTIIKVMDECSRVDFKLKSTFVESSPSLETDVVQNLWEKLRQMDLKQHAISEQLGVSQVVKLASGLSNLISEADVFHNYQHKHDILVPRSFISNEATTSWYNDETMMSSVAVHGFCFYVKLIADVGSKLGCANRIDLTSEVLASTTNTMALGKLSRLDIAKSTVIYTGKELELNNPMESENKASLFEVVQSIVPARISLALKGDIFNEYLSSLRQISRSEAVRVSQGVEKKRRGRSRGAQHYLSRCTALSPEDITLVSGDLYRNVSSQHTINTETSLDPFLHITKRWMGENRELKGKKR	1251

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre6g02190	1251	Gene3D	-	596	658	-	-
	Trre6g02190	1251	MobiDBLite	consensus disorder prediction	785	811	-	-
	Trre6g02190	1251	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	339	649	IPR027417	-
	Trre6g02190	1251	MobiDBLite	consensus disorder prediction	74	98	-	-
	Trre6g02190	1251	FunFam	p-loop containing nucleoside triphosphate hydrolase superfamily protein	598	659	-	-
	Trre6g02190	1251	PANTHER	CELL CYCLE CHECKPOINT PROTEIN RAD17	13	1219	IPR004582	GO:0006281
	Trre6g02190	1251	MobiDBLite	consensus disorder prediction	1	98	-	-
	Trre6g02190	1251	Gene3D	-	337	590	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre6g02190	Trre-Chr6	18543173	18552502	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre6g02190	340	641	Core DNA Replication Machinery Family	AT5G22010	22.540	4.03e-10	62.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre6g02190	K26118		-	gmx:100784209	1513.82