Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02176 ATGGATTGTTGTGTGTGCACAACTATGCCATTGATATTAAGGCCACCAAGGAATACAATATGTGGTGCATGTTATGAAGGTGTTAGGAGCATAATCAACATGATGAATAGTCTTGAAATTGAGAAAGCAAAAGCAATCACTAATCCAAATGGTTCTCCGGTTTCGCCGCGAAATTCGAGTAAGTCACTTGATGATTGTATAAGATGGTGTTCAGAACAAATAGACCAATATAATCAACAAAAACAAGATTTGGCTTTTCTCAGAGGCTATGTTGATGCCTTCAAAGAGCAAATTCACACAGATATATTGATTAGTCCAGGCAATCATGGTCCACCTATACCTGCACATAAATCTGTTTTGGCTGCAAGATCAGAAATTTTTAAGAACATGCTAGAGTGTGATGAATGTAAAGCTGCACCAACTTGTAACACAATAACAATACCTGATTTGAACCATGAAGAACTAGAATCCCTTCTAGAGTTTCTCTATAGTGGAACATTATCATTGGAAAAATTGGAGAAACATGTTTATGCTTTGTCACAAGCAGCTGATAAGTATATTATTCCACACTTCACTTCTAATGCATTTGAGACACTAGAGATTGCTGACACTTGTTCAAACAATAATCTGAAGGAGACAACTTTTAATTTCTTAGTTAAAAATATTGAGCATATGGTTTCTTCTCCTAAATTTGAAGCTTTTGTGCATAGGAGTCCACATTTAACTGTGCAATTAGTTACAAGAGCATTTGTGAATGGTTCCAAATTAGTATTGTGA 777 0.3539 MDCCVCTTMPLILRPPRNTICGACYEGVRSIINMMNSLEIEKAKAITNPNGSPVSPRNSSKSLDDCIRWCSEQIDQYNQQKQDLAFLRGYVDAFKEQIHTDILISPGNHGPPIPAHKSVLAARSEIFKNMLECDECKAAPTCNTITIPDLNHEELESLLEFLYSGTLSLEKLEKHVYALSQAADKYIIPHFTSNAFETLEIADTCSNNNLKETTFNFLVKNIEHMVSSPKFEAFVHRSPHLTVQLVTRAFVNGSKLVL 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02176 258 CDD BTB_POZ_ZBTB_KLHL-like 99 186 - -
Trre6g02176 258 Gene3D - 195 255 - -
Trre6g02176 258 SMART BTB_4 100 203 IPR000210 GO:0005515
Trre6g02176 258 SUPERFAMILY POZ domain 85 193 IPR011333 -
Trre6g02176 258 PANTHER BTB/POZ DOMAIN CONTAINING PROTEIN, EXPRESSED-RELATED 20 255 IPR044784 -
Trre6g02176 258 ProSiteProfiles BTB domain profile. 100 171 IPR000210 GO:0005515
Trre6g02176 258 Pfam BTB/POZ domain 94 196 IPR000210 GO:0005515
Trre6g02176 258 Gene3D Potassium Channel Kv1.1; Chain A 69 194 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02176 Trre-Chr6 18391607 18393506 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Trre6g02176 BTB 2.3e-18 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02176 K10523 - gmx:100777561 442.58