Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02175 ATGGATTGTTGTGTGTGCACAACTATGCCATTGATATTAAGGCCACCAAGGAATACAATATGTGGTGCATGTTATGAAGGTGTTAGGAGCATAATCAACATGATGAATAGTCTTGAAATTGAGAAAGCAAAAGCAATCACTAATCCAAATGGTTCTCCGGTTTCGCCGCGAAATTCGAGTAAGTCACTTGATGATTGTATAAGATGGTGTTCAGAACAAATAGACCAATATAATCAACAAAAACAAGATTTGGCTTTTCTCAGAGGCTATGTTGATGCCTTCAAAGAGCAAATTCACACAGATATATTGATTAGTCCAGGCAATCATGGTCCACCTATACCTGCACATAAATCTGTTTTGGCTGCAAGATCAGAAATTTTTAAGAACATGCTAGAGTGTGATGAATGTAAAGCTGCACCAACTTGTAACACAATAACAATACCTGATTTGAACCATGAAGAACTAGAATCCCTTCTAGAGTTTCTCTATAGTGGAACATTATCATTGGAAAAATTGGAGAAACATGTTTATGCTTTGTCACAAGCAGCTGATAAGAGTCCACATTTAACTGTGCAATTAGTTACAAGAGCATTTGTGAATGGTTCCAAATTAGTATTGTGA 621 0.3639 MDCCVCTTMPLILRPPRNTICGACYEGVRSIINMMNSLEIEKAKAITNPNGSPVSPRNSSKSLDDCIRWCSEQIDQYNQQKQDLAFLRGYVDAFKEQIHTDILISPGNHGPPIPAHKSVLAARSEIFKNMLECDECKAAPTCNTITIPDLNHEELESLLEFLYSGTLSLEKLEKHVYALSQAADKSPHLTVQLVTRAFVNGSKLVL 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02175 206 Pfam BTB/POZ domain 94 182 IPR000210 GO:0005515
Trre6g02175 206 SMART BTB_4 100 202 IPR000210 GO:0005515
Trre6g02175 206 CDD BTB_POZ_ZBTB_KLHL-like 99 185 - -
Trre6g02175 206 PANTHER BTB/POZ DOMAIN CONTAINING PROTEIN, EXPRESSED-RELATED 20 185 IPR044784 -
Trre6g02175 206 Gene3D Potassium Channel Kv1.1; Chain A 69 195 IPR011333 -
Trre6g02175 206 SUPERFAMILY POZ domain 85 185 IPR011333 -
Trre6g02175 206 ProSiteProfiles BTB domain profile. 100 171 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02175 Trre-Chr6 18391607 18393506 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Trre6g02175 BTB 3.6e-16 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02175 K10523 - gmx:100777561 326.635