Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02150 ATGGTCACTCAACAAATTCAGAGCCCTTTATCATCAGATATTCGTATAAAGTCAAGAAAAGCTACTTCATCTGATTGCTCCAACTTTTTAAGACCTGGAATTGACATATCAATGCTATTGGGCTATTGCTACAAAGATAATCCAGATCATTTTGGTCCTATTCCAATGTGTATGGATGCAAGAATAAAATCTATACATAGACAACCTCACGAATCTGATCAATGTTCGTGTCAATTTTACGTAAACTTGTATGATGAACAAGGTTCACTTGGTACAGAGTTAAAAACTCTTGATAAAAAGGTTAATGCCATTGGAATAGGTCAAATTTTCATCCTCCAAAGGCTTCAACATAATACGTGTGAAGACTTGTCGAAAAAGAATGACAATATTGAAGTTAAGCCTTATAGATGGGATTCATCAGAAGATTGTTCTTCATTATCACAATCTAGATTACTCTTTGGGAAATTTTTATCCGACCTTTCGTGGTTTATTACTACATCTTTTTTAAAGAAGGTTTCGTTTCGGATAAGGTCTGCACAAAACAAGATTGTGTATCAAGTTAAGGGAAATGATACCAATATTGTTAGTCCTTTTCTTATAGATGTCGTGAGTTTCAAATCAAAAGAAGGAACAGTAGTTCCAATTGTTTCTGAATTTGACTTGTTTCATGATTATGATGGTAAAGAAGATGAAGCGTCATCAGTTCCGTCTAATGAAATGGAAGACTTACGACGTTCAAAACGTAGGACTGTACAGCCCGAACGTTATGTAGGTTTTGATGTTGAGAAGTTGGAGGTTGGAAATTTTCGAACATGGCCGTATAAGAGACCAAATTATGTGATAGATGATGAAAACTCTTCTTCAGATTCCGAAGAGGATGATGAAAACTCTTCCAAAGATGATCATTTGAGTAAGAATGATGTTAATGAGTTGAATTTGGAACCCTGCATTATTCAGAGTACCATGTCAAATGATGTAGAAATTGATGATAGAGTTTCTTTGGCGGATTATTATAGTTTCGGAAAAGAGAAGCTTAAGAGGAAGCGATTTCATGATTCAGATGATATGGATTTTGAAAGCAAATGGGAAGGGATACATTTCAAAAAGGGAGCTCAAACAAAAAGTTATCATTCCATTTTTACAAGCAGAGAACATGTTCATGAAGAACAAGATCATAAAGACGGTAGATCCTTAAATGTTGATGCATGTAAGGAAATGATAGATACTTACATGAAGAATTTTGATAGTCTACCAACTGAAGAAGAGCCAACTATCATGGAAGAAACAAGCAAGTTGGACCAGAAGGTTGAAGAAAATGTATCGAAAATCGAGGATGAGGAAAAAGATCCTGATGATTTGGCTAGCTTGTGGGAAGAAATGGATACAGCTTTGATATCAAGTAATCTTCTTGATGGAACTGAGGGTTCAAATGCTGAGGTTTTAGCCGAGTCCAAGAAAGAATCCACGGAGATTTGTGAACATGATTATAAATTGGATGAACAAATTGGAACATACTGCCTTCGATGTGGCTTTGTAAAAACCGAGATACGACACATTTCTGAACACGTTATTGAGAGTCCAAGACGGTACAGAGCGGAGAAACAATGCATTGAAGAAGATAAGGAAAATAAATCAGAGCAAAAAGTTGATGAAAATGTTAATAATGATTTGTTCTCAACTCATGCTACTGATCCTGATGAACCAATATCTAAAGAAAATGAGAGTGTTTGGGAATTGATTCCAGAAATCAAAGAAAAAATGCATGCACACCAGAAAAAGGCTTTTGAATTTCTTTGGCAAAACATTGCTGGCTCTATGGAACCATCACTCATGAAAGAAAAATCCAAAACAAATGGTGGTTGTGTCATATCACATGCTCCTGGAGCTGGAAAAACCTTTCTCATTATTTCTTTCCTTGTAAGTTACTTGAAGTTATTTCCAGGGAAGAGACCATTAGTCCTTGCTCCAAAAACCACACTCTATACGTGGCGCAAGGAGTTCAAAAAATGGAAGGCTCCTGTACCGGTGTATCTTATCCACGGCCGTCATACTTGGAAAGGTTCGACGACACCAAAATCGATGGTTCTTCCTGGAGTTCCAAGACCTTCTAGTGATGTCAAACATGTTTTAGATTGTCTTAGCAAGATCCAAAAATGGAATTCACACCCTAGTGTTCTTGTCATGGGTTATACTTCATTTTTATCATTAATGAGATCAGAAGATACAAAATTTGCACACAGAAAATACATGGTTAAAGCATTGAAAGAAAGCCCTGGAATCTTGATACTTGATGAAGGACACAATCCTAGAAGCACTAAATCAAGGTTGAGGAAATGTTTGATGAAACTTCCAACAGAATTGAGAATATTACTTTCTGGCACATTGTTTCAGAACAATTTCTGTGAATATTTTAACACACTTTGTTTAGCTAGACCGAAATTTGTCCACGAAGTTCTACAAGAGTTGGATTCTAAATACCGAAGGAGAGGCAAAGTAGCCAAGAAAGCACGGCATTTGCTCGAGGCGCGGGCGCGGAAATTCTTCTTGGACAACATTGAAAAGAAAATTAACTCAGACATTGATGAGGAGAAGATGCAGGGTTTATATGTGTTGAAAAAAATTACTTCAAGTTTTATCGATGCTTACGATGGTGGAAATTCTTCTGATACTCTTCCTGGGTTACAAATCTATACATTGCTCATGAATACGTCCGATGAACAACATGAGATTGTACAGAAACTTCAGAAGAAAATGGCTGAGTGCACAGGTTACCCTCTTGAGGTTGACCTTTTGATAACACTCGCATCGATACACCCATGGTTGATCAAAACAGCAGCAACATGTGCATCTAAGTTTTTTTCCGAGGAAGAATTGGAGAAACTAGATGCATTGAAGTTTGATTTGAGGAAAGGTTCCAAAGTGAGATTTGTTCTGAGCTTAGTCTCACGTGTAGTGAAAAAGGAAAAGGTTCTTATATTTTGTCACAACCTTGCACCAGTGAGGTTTTTTATAGATTTATTTGAAAAGTATTTTCAGTGGCAAAATGGTAAAGAGATTCTGTTACTAATCGGTGAACTGGATTTATTTGAAAGAGGTAAAGTGATAGATAAATTCGAAGATCCTCGTGGCAGTTCGAAGATACTCCTTGCTTCAATCAATGCATGTGCTGAAGGGATTAGTTTAACATCAGCTTCTAGAGTGATTTTTTTGGATTCTGAGTGGAATCCTTCAAAAACAAAGCAAGCTATTGCGCGCGCTTTTCGTCCAGGTCAGCAGAAAATGGTTTATGTGTATCAGTTATTGACAACCGGGTCGATGGAGGAAGATAAGCATAGAAGAACTAGTTGGAAAGAATGGATATCTTGCATGATTTTCAGCGAGGAATTTGTTGAAGATCCTTCTAAATGGAAAGCAGAGAAGATTGAAGATAATATACTTAGGGAGATGGTTGAAGAGGATAAGTCTAAAGCTATTCATATGATTATGAAGAAAGAAAAGGACTCAACAAGCTAA 3513 0.3672 MVTQQIQSPLSSDIRIKSRKATSSDCSNFLRPGIDISMLLGYCYKDNPDHFGPIPMCMDARIKSIHRQPHESDQCSCQFYVNLYDEQGSLGTELKTLDKKVNAIGIGQIFILQRLQHNTCEDLSKKNDNIEVKPYRWDSSEDCSSLSQSRLLFGKFLSDLSWFITTSFLKKVSFRIRSAQNKIVYQVKGNDTNIVSPFLIDVVSFKSKEGTVVPIVSEFDLFHDYDGKEDEASSVPSNEMEDLRRSKRRTVQPERYVGFDVEKLEVGNFRTWPYKRPNYVIDDENSSSDSEEDDENSSKDDHLSKNDVNELNLEPCIIQSTMSNDVEIDDRVSLADYYSFGKEKLKRKRFHDSDDMDFESKWEGIHFKKGAQTKSYHSIFTSREHVHEEQDHKDGRSLNVDACKEMIDTYMKNFDSLPTEEEPTIMEETSKLDQKVEENVSKIEDEEKDPDDLASLWEEMDTALISSNLLDGTEGSNAEVLAESKKESTEICEHDYKLDEQIGTYCLRCGFVKTEIRHISEHVIESPRRYRAEKQCIEEDKENKSEQKVDENVNNDLFSTHATDPDEPISKENESVWELIPEIKEKMHAHQKKAFEFLWQNIAGSMEPSLMKEKSKTNGGCVISHAPGAGKTFLIISFLVSYLKLFPGKRPLVLAPKTTLYTWRKEFKKWKAPVPVYLIHGRHTWKGSTTPKSMVLPGVPRPSSDVKHVLDCLSKIQKWNSHPSVLVMGYTSFLSLMRSEDTKFAHRKYMVKALKESPGILILDEGHNPRSTKSRLRKCLMKLPTELRILLSGTLFQNNFCEYFNTLCLARPKFVHEVLQELDSKYRRRGKVAKKARHLLEARARKFFLDNIEKKINSDIDEEKMQGLYVLKKITSSFIDAYDGGNSSDTLPGLQIYTLLMNTSDEQHEIVQKLQKKMAECTGYPLEVDLLITLASIHPWLIKTAATCASKFFSEEELEKLDALKFDLRKGSKVRFVLSLVSRVVKKEKVLIFCHNLAPVRFFIDLFEKYFQWQNGKEILLLIGELDLFERGKVIDKFEDPRGSSKILLASINACAEGISLTSASRVIFLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLTTGSMEEDKHRRTSWKEWISCMIFSEEFVEDPSKWKAEKIEDNILREMVEEDKSKAIHMIMKKEKDSTS 1170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02150 1170 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 889 1155 IPR027417 -
Trre6g02150 1170 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 561 824 IPR027417 -
Trre6g02150 1170 Gene3D - 557 855 IPR038718 -
Trre6g02150 1170 SMART ultradead3 583 821 IPR014001 -
Trre6g02150 1170 Pfam Helicase conserved C-terminal domain 973 1089 IPR001650 -
Trre6g02150 1170 Pfam SNF2-related domain 596 864 IPR000330 GO:0005524|GO:0140658
Trre6g02150 1170 Coils Coil 426 446 - -
Trre6g02150 1170 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 612 813 IPR014001 -
Trre6g02150 1170 MobiDBLite consensus disorder prediction 280 306 - -
Trre6g02150 1170 Gene3D - 892 1170 IPR027417 -
Trre6g02150 1170 MobiDBLite consensus disorder prediction 228 247 - -
Trre6g02150 1170 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 11 1169 IPR044567 GO:0080188
Trre6g02150 1170 SMART helicmild6 1005 1090 IPR001650 -
Trre6g02150 1170 CDD SF2_C_SNF 972 1101 - -
Trre6g02150 1170 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 976 1142 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02150 Trre-Chr6 18174444 18178652 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02150 960 1108 RAD5 or RAD16-like Gene Family AT5G43530 32.237 5.86e-12 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre6g02150 SNF2_N 5e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02150 K10875 - jre:108991882 1231.08