Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02149 ATGGCACCTAGAAAAAGAAATTTGCATCAATGGAAGCATCCATTCAATGATGATTATCCATTTGAAGTAGTATTGAATGGCTCATGGCAACCGGTAGAACTCATAAAAATTGAGTCAGGAAAAACTACCTTACATTTCATGGTCACTCAACAAATTCAGAGCCCTTTATCATCAGATATTCGTATAAAGTCAAGAAAAGCTACTTCATCTGATTGCTCCAACTTTTTAAGACCTGGAATTGACATATCAATGCTATTGGGCTATTGCTACAAAGATAATCCAGATCATTTTGGTCCTATTCCAATGTGTATGGATGCAAGAATAAAATCTATACATAGACAACCTCACGAATCTGATCAATGTTCGTGTCAATTTTACGTAAACTTGTATGATGAACAAGGTTCACTTGGTACAGAGTTAAAAACTCTTGATAAAAAGGTTAATGCCATTGGAATAGGTCAAATTTTCATCCTCCAAAGGCTTCAACATAATACGTGTGAAGACTTGTCGAAAAAGAATGACAATATTGAAGTTAAGCCTTATAGATGGGATTCATCAGAAGATTGTTCTTCATTATCACAATCTAGATTACTCTTTGGGAAATTTTTATCCGACCTTTCGTGGTTTATTACTACATCTTTTTTAAAGAAGGTTTCGTTTCGGATAAGGTCTGCACAAAACAAGATTGTGTATCAAGTTAAGGGAAATGATACCAATATTGTTAGTCCTTTTCTTATAGATGTCGTGAGTTTCAAATCAAAAGAAGGAACAGTAGTTCCAATTGTTTCTGAATTTGACTTGTTTCATGATTATGATGGTAAAGAAGATGAAGCGTCATCAGTTCCGTCTAATGAAATGGAAGACTTACGACGTTCAAAACGTAGGACTGTACAGCCCGAACGTTATGTAGGTTTTGATGTTGAGAAGTTGGAGGTTGGAAATTTTCGAACATGGCCGTATAAGAGACCAAATTATGTGATAGATGATGAAAACTCTTCTTCAGATTCCGAAGAGGATGATGAAAACTCTTCCAAAGATGATCATTTGAGTAAGAATGATGTTAATGAGTTGAATTTGGAACCCTGCATTATTCAGAGTACCATGTCAAATGATGTAGAAATTGATGATAGAGTTTCTTTGGCGGATTATTATAGTTTCGGAAAAGAGAAGCTTAAGAGGAAGCGATTTCATGATTCAGATGATATGGATTTTGAAAGCAAATGGGAAGGGATACATTTCAAAAAGGGAGCTCAAACAAAAAGTTATCATTCCATTTTTACAAGCAGAGAACATGTTCATGAAGAACAAGATCATAAAGACGGTAGATCCTTAAATGTTGATGCATGTAAGGAAATGATAGATACTTACATGAAGAATTTTGATAGTCTACCAACTGAAGAAGAGCCAACTATCATGGAAGAAACAAGCAAGTTGGACCAGAAGGTTGAAGAAAATGTATCGAAAATCGAGGATGAGGAAAAAGATCCTGATGATTTGGCTAGCTTGTGGGAAGAAATGGATACAGCTTTGATATCAAGTAATCTTCTTGATGGAACTGAGGGTTCAAATGCTGAGGTTTTAGCCGAGTCCAAGAAAGAATCCACGGAGATTTGTGAACATGATTATAAATTGGATGAACAAATTGGAACATACTGCCTTCGATGTGGCTTTGTAAAAACCGAGATACGACACATTTCTGAACACGTTATTGAGAGTCCAAGACGGTACAGAGCGGAGAAACAATGCATTGAAGAAGATAAGGAAAATAAATCAGAGCAAAAAGTTGATGAAAATGTTAATAATGATTTGTTCTCAACTCATGCTACTGATCCTGATGAACCAATATCTAAAGAAAATGAGAGTGTTTGGGAATTGATTCCAGAAATCAAAGAAAAAATGCATGCACACCAGAAAAAGGCTTTTGAATTTCTTTGGCAAAACATTGCTGGCTCTATGGAACCATCACTCATGAAAGAAAAATCCAAAACAAATGGTGGTTGTGTCATATCACATGCTCCTGGAGCTGGAAAAACCTTTCTCATTATTTCTTTCCTTGTAAGTTACTTGAAGTTATTTCCAGGGAAGAGACCATTAGTCCTTGCTCCAAAAACCACACTCTATACGTGGCGCAAGGAGTTCAAAAAATGGAAGGCTCCTGTACCGGTGTATCTTATCCACGGCCGTCATACTTGGAAAGGTTCGACGACACCAAAATCGATGGTTCTTCCTGGAGTTCCAAGACCTTCTAGTGATGTCAAACATGTTTTAGATTGTCTTAGCAAGATCCAAAAATGGAATTCACACCCTAGTGTTCTTGTCATGGGTTATACTTCATTTTTATCATTAATGAGATCAGAAGATACAAAATTTGCACACAGAAAATACATGGTTAAAGCATTGAAAGAAAGCCCTGGAATCTTGATACTTGATGAAGGACACAATCCTAGAAGCACTAAATCAAGGTTGAGGAAATGTTTGATGAAACTTCCAACAGAATTGAGAATATTACTTTCTGGCACATTGTTTCAGAACAATTTCTGTGAATATTTTAACACACTTTGTTTAGCTAGACCGAAATTTGTCCACGAAGTTCTACAAGAGTTGGATTCTAAATACCGAAGGAGAGGCAAAGTAGCCAAGAAAGCACGGCATTTGCTCGAGGCGCGGGCGCGGAAATTCTTCTTGGACAACATTGAAAAGAAAATTAACTCAGACATTGATGAGGAGAAGATGCAGGGTTTATATGTGTTGAAAAAAATTACTTCAAGTTTTATCGATGCTTACGATGGTGGAAATTCTTCTGATACTCTTCCTGGGTTACAAATCTATACATTGCTCATGAATACGTCCGATGAACAACATGAGATTGTACAGAAACTTCAGAAGAAAATGGCTGAGTGCACAGGTTACCCTCTTGAGGTTGACCTTTTGATAACACTCGCATCGATACACCCATGGTTGATCAAAACAGCAGCAACATGTGCATCTAAGTTTTTTTCCGAGGAAGAATTGGAGAAACTAGATGCATTGAAGTTTGATTTGAGGAAAGGTTCCAAAGTGAGATTTGTTCTGAGCTTAGTCTCACGTGTAGTGAAAAAGGAAAAGGTTCTTATATTTTGTCACAACCTTGCACCAGTGAGGTTTTTTATAGATTTATTTGAAAAGTATTTTCAGTGGCAAAATGGTAAAGAGATTCTGTTACTAATCGGTGAACTGGATTTATTTGAAAGAGGTAAAGTGATAGATAAATTCGAAGATCCTCGTGGCAGTTCGAAGATACTCCTTGCTTCAATCAATGCATGTGCTGAAGGGATTAGTTTAACATCAGCTTCTAGAGTGATTTTTTTGGATTCTGAGTGGAATCCTTCAAAAACAAAGCAAGCTATTGCGCGCGCTTTTCGTCCAGGTCAGCAGAAAATGGTTTATGTGTATCAGTTATTGACAACCGGGTCGATGGAGGAAGATAAGCATAGAAGAACTAGTTGGAAAGAATGGATATCTTGCATGATTTTCAGCGAGGAATTTGTTGAAGATCCTTCTAAATGGAAAGCAGAGAAGATTGAAGATAATATACTTAGGGAGATGGTTGAAGAGGATAAGTCTAAAGCTATTCATATGATTATGAAGAAAGAAAAGGACTCAACAAGCTAA 3651 0.3667 MAPRKRNLHQWKHPFNDDYPFEVVLNGSWQPVELIKIESGKTTLHFMVTQQIQSPLSSDIRIKSRKATSSDCSNFLRPGIDISMLLGYCYKDNPDHFGPIPMCMDARIKSIHRQPHESDQCSCQFYVNLYDEQGSLGTELKTLDKKVNAIGIGQIFILQRLQHNTCEDLSKKNDNIEVKPYRWDSSEDCSSLSQSRLLFGKFLSDLSWFITTSFLKKVSFRIRSAQNKIVYQVKGNDTNIVSPFLIDVVSFKSKEGTVVPIVSEFDLFHDYDGKEDEASSVPSNEMEDLRRSKRRTVQPERYVGFDVEKLEVGNFRTWPYKRPNYVIDDENSSSDSEEDDENSSKDDHLSKNDVNELNLEPCIIQSTMSNDVEIDDRVSLADYYSFGKEKLKRKRFHDSDDMDFESKWEGIHFKKGAQTKSYHSIFTSREHVHEEQDHKDGRSLNVDACKEMIDTYMKNFDSLPTEEEPTIMEETSKLDQKVEENVSKIEDEEKDPDDLASLWEEMDTALISSNLLDGTEGSNAEVLAESKKESTEICEHDYKLDEQIGTYCLRCGFVKTEIRHISEHVIESPRRYRAEKQCIEEDKENKSEQKVDENVNNDLFSTHATDPDEPISKENESVWELIPEIKEKMHAHQKKAFEFLWQNIAGSMEPSLMKEKSKTNGGCVISHAPGAGKTFLIISFLVSYLKLFPGKRPLVLAPKTTLYTWRKEFKKWKAPVPVYLIHGRHTWKGSTTPKSMVLPGVPRPSSDVKHVLDCLSKIQKWNSHPSVLVMGYTSFLSLMRSEDTKFAHRKYMVKALKESPGILILDEGHNPRSTKSRLRKCLMKLPTELRILLSGTLFQNNFCEYFNTLCLARPKFVHEVLQELDSKYRRRGKVAKKARHLLEARARKFFLDNIEKKINSDIDEEKMQGLYVLKKITSSFIDAYDGGNSSDTLPGLQIYTLLMNTSDEQHEIVQKLQKKMAECTGYPLEVDLLITLASIHPWLIKTAATCASKFFSEEELEKLDALKFDLRKGSKVRFVLSLVSRVVKKEKVLIFCHNLAPVRFFIDLFEKYFQWQNGKEILLLIGELDLFERGKVIDKFEDPRGSSKILLASINACAEGISLTSASRVIFLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLTTGSMEEDKHRRTSWKEWISCMIFSEEFVEDPSKWKAEKIEDNILREMVEEDKSKAIHMIMKKEKDSTS 1216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02149 1216 SMART helicmild6 1051 1136 IPR001650 -
Trre6g02149 1216 Pfam Helicase conserved C-terminal domain 1019 1135 IPR001650 -
Trre6g02149 1216 MobiDBLite consensus disorder prediction 274 293 - -
Trre6g02149 1216 Pfam SNF2-related domain 642 910 IPR000330 GO:0005524|GO:0140658
Trre6g02149 1216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 935 1201 IPR027417 -
Trre6g02149 1216 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1022 1188 IPR001650 -
Trre6g02149 1216 Gene3D - 603 901 IPR038718 -
Trre6g02149 1216 CDD SF2_C_SNF 1018 1147 - -
Trre6g02149 1216 SMART ultradead3 629 867 IPR014001 -
Trre6g02149 1216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 607 870 IPR027417 -
Trre6g02149 1216 Coils Coil 472 492 - -
Trre6g02149 1216 Gene3D - 938 1216 IPR027417 -
Trre6g02149 1216 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 57 1215 IPR044567 GO:0080188
Trre6g02149 1216 MobiDBLite consensus disorder prediction 326 352 - -
Trre6g02149 1216 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 658 859 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02149 Trre-Chr6 18174444 18179337 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02149 1006 1176 RAD5 or RAD16-like Gene Family AT5G43530 29.885 7.87e-12 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre6g02149 SNF2_N 5.4e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02149 K10875 - jre:108991882 1269.22