Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02148 ATGGACACCGAACAATTTCAGAGCCCTTTATCGTCAAACATTCGTGTAAAATCAAGAAAAGCTACTGCATATGATTGCTCCGGCTTTTTAAGACCTGGAATTGACATATCAATGCTGCTAGGGTACTGCTACAATGATAATCCAGATCAATTTGGTCCTATTCCAATGTGTATGGATGCAAGAATAACTTCTATTCAAAGACAACCTCACGAATCCGATCAATGTTCATGTCAATTTTACGTAAATTTGTATGATGATCAAGGTTCACTTGGTACAGAGTTAAAAACTCTTGATAAAGAGGTTAATGCCATTGGAATAGATCAAGTTTTCATCCTCCAAAAGCTTCAACATAATATCTGTGAAGCCTTGTTGAAAAAGAATGACAGTTCTGAATCTGAAGTTAAGCCTTATAGATGGGATTCATCAGAAGATTGTTCTTCACTATCACATTCTCGATTACTTATTGGGAAATTCTTATCCGATCTTTCGTGGTTTGTTACTACGTCTTTTCTGAAAAAGGTTTCATTTCGTATAAGGTCTGGTCAAAACAAGATTGTGTATCAAGTTAAGGGAAATGATACCGATATTGTTAGTCCTTTTCTTATCGATGTCGTGAATTTCAAATCAAAAGAGGGATCAGTAGTTCCAATTGTTTCTGAATTTGACTTGTTTCATGATTATGATGGTAAAGAAGATGAAGCGTCATCAGTTCCGTCTAATGAAATGGAAGACTTACGACGTTCAAAACGTAAGACTGTACACCCCGAACGTTATGTAGGTTTTGATGTTGAGAAGTTGGAGGTTGGAAATTTTAGAACGTGGCCGTATAAGAGATCATCATATGTGATAGATGATGAAAACTCTTCATCAGATTCAGAAGAGGAGGATGATGTAAACAATGTAGAAGTTGATGATAGAGTTTCTTTGGGGGATTATTATAGTTTCGGAAGAGAGAAGCGTAAGAGGATGCGATTTAATGGTTCAGATGATATTGATTTTGAAAGCAAAATGGAAGGGATACATTTGAAAAAAGGAGCTCAAACAAAAAGATACAATTCCATTTTTACAAGTAGAAATCATGTTCATGAAGAACAAGATCGTAAAGGTGGTAGATCGTTAAATGCTGATGCGCGCAAGGAAATGATCGATACTTACATGAAGAATTTTGATAGTCTACCAACTGAAGAAGAATTAACTATCAATGAAGAAACAAGCAAGTTGGAGGAGAAGGAGGAAGAAAATGTATCGAAAAGTGTTGACGAGGAAGAAAATCATGATGATTTGTGGGCAGAAATGGAAACAGCTTTGATATCAAGTAATCTTCTTGATGGAACTGAGGGTTCGAATGCTGAGGTTTTAGCTGAATCCACGGAAATTTGTGAGCATGATTATATAACGGATGAACAAATTGGAATATACTGCCTTCGATGCGGCTTTGTGAAAACTGAGATACGACACATTTCTGAACACATTATTGAAAGTCCAAGACGGTACAGAAAGGAGAAAGAATGCATTGAAGAAGAAAAGGAAAATAAATCAGAGCAAAAAGTTGATGAAGATGTTAATAATGATTTGTTCTCAACTCATGCTACTGATCCTGATGAACCAATATCTAAAGAAAATGAGAGTGTTTGGGAATTGATTCCAGAACTGAAAGAAAAAATGCATGCACACCAGAAAAAGGCTTTTGAATTTCTTTGGCAAAACATTGCTGGCTCTATGGAACCATCACTCATGAAAGAAAAATCCAAAACAAATGGTGGTTGTGTCATATCACATGCTCCTGGAGCTGGAAAAACCTTTCTCATTATTTCTTTTCTTGCAAGTTACTTGAAGTTATTTCCGGGGAAGAGACCATTAGTCCTTGCTCCAAAAACCACACTCTACACGTGGCGCAAAGAGTTCAAAAAATGGAAGGCTCCTGGAGTTCCAAGACCTTCTGGTGATGTCAAACATGTTTTGGATTGTCTTAGCAAGATCCAAAAATGGAATTCACACCCTGGTGTTCTTGTTATGGGTTATTCTTCGTTTTTATCTCTAATGAGATCAGAAGATTCAAAATTTGCTCACAGAAAATACATGGTTCAAGCATTGAAGGAAAGCCCTGGAATCATAATACTTGATGAAGGACACAATCCTAGAAGCAATAAATCAAGATTGAGGAAATGTTTGATGAAACTTTCAACGGAATTGAGAATATTACTCTCTGGCACGTTGTTTCAGAACAATTTCTGTGAATATTTCAACACGCTTTGCTTAGCAAGACCGAAATTTGTCCATGAAGTTCTACAAGAGTTAGATTCTAAATACCAAAGGAGTGGCAAAGTAGCGAAGAAAGCGCCGCATTTGCTCGAGGCGCGGGCGAGGAAATTCTTCTTGGACAACATCGAAAAGAAAATTAACTCAGACATTGATGAGGAGAAGATGGAGGGTCTACATGTGCTGAGAAAAATTACTTCTGGTTTTATCGATGTATATGATAGTGGAAATTCTTCTGATACTCTTCCTGGGTTACAAATCTATACATTGCTCATGAATACGTCCGATGAACAACATGAGATTGTACAGAAACTTCAGAAGAAAATGGATGAGTGTACCGGTTACCCTCTTGAGGTTGAGCATTTGATATCACTCGCATCGATACATCCATGGTTGATCAAAACAGCAGCAACATGTGCAGCTAAGATTTTCACCGAAGATGAATTGGAGAAACTGGAACCATTGAAGTTTGATTTGAGAAAAGGTTCGAAAGTGAGATTTGTTCTGAGCCTAGTCTCACGTGTGGTGAATAAGGAAAAGGTTCTTATCTTTTGTCACAACCTTGCACCAGTGAGGTTTCTTATAGATTTATTTGCAAAGTATTTTCAGTGGCAAAATGGTAAAGAGATTCTGTTACTAACCGGTGAACTGGATTTATTTGAAAGAGGTAAAGTGATAGATAAATTCGAAGATGCCCGCAGCAGTTCGAAGATACTTCTTGCTTCAATCAATGCTTGTGCTGAAGGGATTAGTTTAACATCAGCTTCTAGAGTGATTTTTTTGGACTCTGAGTGGAATCCTTCAAAAACAAAGCAAGCTATTGCGCGCGCTTTTCGTCCGGGTCAGCAGAAAATGGTTTATGTGTATCAATTATTGACGACAGGGTCGATGGAGGAAGATAAGCATAGAAGAACTAGTTGGAAAGAGTGGATATCTTGCATGATTTTCAGCGAGGAATTTGTTGAAGATCCTTCTAAATGGCAAGCAGAGAAGATTGAAGATAATATACTTAGGGAGATGGTTGAAGAGGATAAGTCTAAAGCTATTCATATGATTATGAAGAATGAAAAAGCTTCAACAAGCTAA 3345 0.3722 MDTEQFQSPLSSNIRVKSRKATAYDCSGFLRPGIDISMLLGYCYNDNPDQFGPIPMCMDARITSIQRQPHESDQCSCQFYVNLYDDQGSLGTELKTLDKEVNAIGIDQVFILQKLQHNICEALLKKNDSSESEVKPYRWDSSEDCSSLSHSRLLIGKFLSDLSWFVTTSFLKKVSFRIRSGQNKIVYQVKGNDTDIVSPFLIDVVNFKSKEGSVVPIVSEFDLFHDYDGKEDEASSVPSNEMEDLRRSKRKTVHPERYVGFDVEKLEVGNFRTWPYKRSSYVIDDENSSSDSEEEDDVNNVEVDDRVSLGDYYSFGREKRKRMRFNGSDDIDFESKMEGIHLKKGAQTKRYNSIFTSRNHVHEEQDRKGGRSLNADARKEMIDTYMKNFDSLPTEEELTINEETSKLEEKEEENVSKSVDEEENHDDLWAEMETALISSNLLDGTEGSNAEVLAESTEICEHDYITDEQIGIYCLRCGFVKTEIRHISEHIIESPRRYRKEKECIEEEKENKSEQKVDEDVNNDLFSTHATDPDEPISKENESVWELIPELKEKMHAHQKKAFEFLWQNIAGSMEPSLMKEKSKTNGGCVISHAPGAGKTFLIISFLASYLKLFPGKRPLVLAPKTTLYTWRKEFKKWKAPGVPRPSGDVKHVLDCLSKIQKWNSHPGVLVMGYSSFLSLMRSEDSKFAHRKYMVQALKESPGIIILDEGHNPRSNKSRLRKCLMKLSTELRILLSGTLFQNNFCEYFNTLCLARPKFVHEVLQELDSKYQRSGKVAKKAPHLLEARARKFFLDNIEKKINSDIDEEKMEGLHVLRKITSGFIDVYDSGNSSDTLPGLQIYTLLMNTSDEQHEIVQKLQKKMDECTGYPLEVEHLISLASIHPWLIKTAATCAAKIFTEDELEKLEPLKFDLRKGSKVRFVLSLVSRVVNKEKVLIFCHNLAPVRFLIDLFAKYFQWQNGKEILLLTGELDLFERGKVIDKFEDARSSSKILLASINACAEGISLTSASRVIFLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLTTGSMEEDKHRRTSWKEWISCMIFSEEFVEDPSKWQAEKIEDNILREMVEEDKSKAIHMIMKNEKASTS 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02148 1114 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 580 757 IPR014001 -
Trre6g02148 1114 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 11 1113 IPR044567 GO:0080188
Trre6g02148 1114 Pfam SNF2-related domain 560 813 IPR000330 GO:0005524|GO:0140658
Trre6g02148 1114 Gene3D - 836 1114 IPR027417 -
Trre6g02148 1114 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 920 1086 IPR001650 -
Trre6g02148 1114 Pfam Helicase conserved C-terminal domain 917 1033 IPR001650 -
Trre6g02148 1114 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 833 1099 IPR027417 -
Trre6g02148 1114 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 515 759 IPR027417 -
Trre6g02148 1114 MobiDBLite consensus disorder prediction 399 423 - -
Trre6g02148 1114 CDD SF2_C_SNF 916 1045 - -
Trre6g02148 1114 Gene3D - 525 798 IPR038718 -
Trre6g02148 1114 SMART helicmild6 949 1034 IPR001650 -
Trre6g02148 1114 SMART ultradead3 551 765 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02148 Trre-Chr6 18164082 18168256 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02148 960 1052 RAD5 or RAD16-like Gene Family AT5G05130 38.298 5.15e-11 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre6g02148 SNF2_N 1.1e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02148 K10875 - egr:104421037 1043.49