Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02147 ATGGCGCCTAGAAAAAGGAATTTAATTCAACAGAAGCATCCATTTAATGACGATTATCCATTTGAAGCAGTATTGAATGGCTCATGGCAACCGGTAGAACTCATAAAAATTGAGTCTGGAAAAACTTCCATAAAATTCATGGACACCGAACAATTTCAGAGCCCTTTATCGTCAAACATTCGTGTAAAATCAAGAAAAGCTACTGCATATGATTGCTCCGGCTTTTTAAGACCTGGAATTGACATATCAATGCTGCTAGGGTACTGCTACAATGATAATCCAGATCAATTTGGTCCTATTCCAATGTGTATGGATGCAAGAATAACTTCTATTCAAAGACAACCTCACGAATCCGATCAATGTTCATGTCAATTTTACGTAAATTTGTATGATGATCAAGGTTCACTTGGTACAGAGTTAAAAACTCTTGATAAAGAGGTTAATGCCATTGGAATAGATCAAGTTTTCATCCTCCAAAAGCTTCAACATAATATCTGTGAAGCCTTGTTGAAAAAGAATGACAGTTCTGAATCTGAAGTTAAGCCTTATAGATGGGATTCATCAGAAGATTGTTCTTCACTATCACATTCTCGATTACTTATTGGGAAATTCTTATCCGATCTTTCGTGGTTTGTTACTACGTCTTTTCTGAAAAAGGTTTCATTTCGTATAAGGTCTGGTCAAAACAAGATTGTGTATCAAGTTAAGGGAAATGATACCGATATTGTTAGTCCTTTTCTTATCGATGTCGTGAATTTCAAATCAAAAGAGGGATCAGTAGTTCCAATTGTTTCTGAATTTGACTTGTTTCATGATTATGATGGTAAAGAAGATGAAGCGTCATCAGTTCCGTCTAATGAAATGGAAGACTTACGACGTTCAAAACGTAAGACTGTACACCCCGAACGTTATGTAGGTTTTGATGTTGAGAAGTTGGAGGTTGGAAATTTTAGAACGTGGCCGTATAAGAGATCATCATATGTGATAGATGATGAAAACTCTTCATCAGATTCAGAAGAGGAGGATGATGTAAACAATGTAGAAGTTGATGATAGAGTTTCTTTGGGGGATTATTATAGTTTCGGAAGAGAGAAGCGTAAGAGGATGCGATTTAATGGTTCAGATGATATTGATTTTGAAAGCAAAATGGAAGGGATACATTTGAAAAAAGGAGCTCAAACAAAAAGATACAATTCCATTTTTACAAGTAGAAATCATGTTCATGAAGAACAAGATCGTAAAGGTGGTAGATCGTTAAATGCTGATGCGCGCAAGGAAATGATCGATACTTACATGAAGAATTTTGATAGTCTACCAACTGAAGAAGAATTAACTATCAATGAAGAAACAAGCAAGTTGGAGGAGAAGGAGGAAGAAAATGTATCGAAAAGTGTTGACGAGGAAGAAAATCATGATGATTTGTGGGCAGAAATGGAAACAGCTTTGATATCAAGTAATCTTCTTGATGGAACTGAGGGTTCGAATGCTGAGGTTTTAGCTGAATCCACGGAAATTTGTGAGCATGATTATATAACGGATGAACAAATTGGAATATACTGCCTTCGATGCGGCTTTGTGAAAACTGAGATACGACACATTTCTGAACACATTATTGAAAGTCCAAGACGGTACAGAAAGGAGAAAGAATGCATTGAAGAAGAAAAGGAAAATAAATCAGAGCAAAAAGTTGATGAAGATGTTAATAATGATTTGTTCTCAACTCATGCTACTGATCCTGATGAACCAATATCTAAAGAAAATGAGAGTGTTTGGGAATTGATTCCAGAACTGAAAGAAAAAATGCATGCACACCAGAAAAAGGCTTTTGAATTTCTTTGGCAAAACATTGCTGGCTCTATGGAACCATCACTCATGAAAGAAAAATCCAAAACAAATGGTGGTTGTGTCATATCACATGCTCCTGGAGCTGGAAAAACCTTTCTCATTATTTCTTTTCTTGCAAGTTACTTGAAGTTATTTCCGGGGAAGAGACCATTAGTCCTTGCTCCAAAAACCACACTCTACACGTGGCGCAAAGAGTTCAAAAAATGGAAGGCTCCTGGAGTTCCAAGACCTTCTGGTGATGTCAAACATGTTTTGGATTGTCTTAGCAAGATCCAAAAATGGAATTCACACCCTGGTGTTCTTGTTATGGGTTATTCTTCGTTTTTATCTCTAATGAGATCAGAAGATTCAAAATTTGCTCACAGAAAATACATGGTTCAAGCATTGAAGGAAAGCCCTGGAATCATAATACTTGATGAAGGACACAATCCTAGAAGCAATAAATCAAGATTGAGGAAATGTTTGATGAAACTTTCAACGGAATTGAGAATATTACTCTCTGGCACGTTGTTTCAGAACAATTTCTGTGAATATTTCAACACGCTTTGCTTAGCAAGACCGAAATTTGTCCATGAAGTTCTACAAGAGTTAGATTCTAAATACCAAAGGAGTGGCAAAGTAGCGAAGAAAGCGCCGCATTTGCTCGAGGCGCGGGCGAGGAAATTCTTCTTGGACAACATCGAAAAGAAAATTAACTCAGACATTGATGAGGAGAAGATGGAGGGTCTACATGTGCTGAGAAAAATTACTTCTGGTTTTATCGATGTATATGATAGTGGAAATTCTTCTGATACTCTTCCTGGGTTACAAATCTATACATTGCTCATGAATACGTCCGATGAACAACATGAGATTGTACAGAAACTTCAGAAGAAAATGGATGAGTGTACCGGTTACCCTCTTGAGGTTGAGCATTTGATATCACTCGCATCGATACATCCATGGTTGATCAAAACAGCAGCAACATGTGCAGCTAAGATTTTCACCGAAGATGAATTGGAGAAACTGGAACCATTGAAGTTTGATTTGAGAAAAGGTTCGAAAGTGAGATTTGTTCTGAGCCTAGTCTCACGTGTGGTGAATAAGGAAAAGGTTCTTATCTTTTGTCACAACCTTGCACCAGTGAGGTTTCTTATAGATTTATTTGCAAAGTATTTTCAGTGGCAAAATGGTAAAGAGATTCTGTTACTAACCGGTGAACTGGATTTATTTGAAAGAGGTAAAGTGATAGATAAATTCGAAGATGCCCGCAGCAGTTCGAAGATACTTCTTGCTTCAATCAATGCTTGTGCTGAAGGGATTAGTTTAACATCAGCTTCTAGAGTGATTTTTTTGGACTCTGAGTGGAATCCTTCAAAAACAAAGCAAGCTATTGCGCGCGCTTTTCGTCCGGGTCAGCAGAAAATGGTTTATGTGTATCAATTATTGACGACAGGGTCGATGGAGGAAGATAAGCATAGAAGAACTAGTTGGAAAGAGTGGATATCTTGCATGATTTTCAGCGAGGAATTTGTTGAAGATCCTTCTAAATGGCAAGCAGAGAAGATTGAAGATAATATACTTAGGGAGATGGTTGAAGAGGATAAGTCTAAAGCTATTCATATGATTATGAAGAATGAAAAAGCTTCAACAAGCTAA 3483 0.3715 MAPRKRNLIQQKHPFNDDYPFEAVLNGSWQPVELIKIESGKTSIKFMDTEQFQSPLSSNIRVKSRKATAYDCSGFLRPGIDISMLLGYCYNDNPDQFGPIPMCMDARITSIQRQPHESDQCSCQFYVNLYDDQGSLGTELKTLDKEVNAIGIDQVFILQKLQHNICEALLKKNDSSESEVKPYRWDSSEDCSSLSHSRLLIGKFLSDLSWFVTTSFLKKVSFRIRSGQNKIVYQVKGNDTDIVSPFLIDVVNFKSKEGSVVPIVSEFDLFHDYDGKEDEASSVPSNEMEDLRRSKRKTVHPERYVGFDVEKLEVGNFRTWPYKRSSYVIDDENSSSDSEEEDDVNNVEVDDRVSLGDYYSFGREKRKRMRFNGSDDIDFESKMEGIHLKKGAQTKRYNSIFTSRNHVHEEQDRKGGRSLNADARKEMIDTYMKNFDSLPTEEELTINEETSKLEEKEEENVSKSVDEEENHDDLWAEMETALISSNLLDGTEGSNAEVLAESTEICEHDYITDEQIGIYCLRCGFVKTEIRHISEHIIESPRRYRKEKECIEEEKENKSEQKVDEDVNNDLFSTHATDPDEPISKENESVWELIPELKEKMHAHQKKAFEFLWQNIAGSMEPSLMKEKSKTNGGCVISHAPGAGKTFLIISFLASYLKLFPGKRPLVLAPKTTLYTWRKEFKKWKAPGVPRPSGDVKHVLDCLSKIQKWNSHPGVLVMGYSSFLSLMRSEDSKFAHRKYMVQALKESPGIIILDEGHNPRSNKSRLRKCLMKLSTELRILLSGTLFQNNFCEYFNTLCLARPKFVHEVLQELDSKYQRSGKVAKKAPHLLEARARKFFLDNIEKKINSDIDEEKMEGLHVLRKITSGFIDVYDSGNSSDTLPGLQIYTLLMNTSDEQHEIVQKLQKKMDECTGYPLEVEHLISLASIHPWLIKTAATCAAKIFTEDELEKLEPLKFDLRKGSKVRFVLSLVSRVVNKEKVLIFCHNLAPVRFLIDLFAKYFQWQNGKEILLLTGELDLFERGKVIDKFEDARSSSKILLASINACAEGISLTSASRVIFLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLTTGSMEEDKHRRTSWKEWISCMIFSEEFVEDPSKWQAEKIEDNILREMVEEDKSKAIHMIMKNEKASTS 1160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02147 1160 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 57 1159 IPR044567 GO:0080188
Trre6g02147 1160 Gene3D - 571 844 IPR038718 -
Trre6g02147 1160 SMART helicmild6 995 1080 IPR001650 -
Trre6g02147 1160 SMART ultradead3 597 811 IPR014001 -
Trre6g02147 1160 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 966 1132 IPR001650 -
Trre6g02147 1160 MobiDBLite consensus disorder prediction 445 469 - -
Trre6g02147 1160 CDD SF2_C_SNF 962 1091 - -
Trre6g02147 1160 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 879 1145 IPR027417 -
Trre6g02147 1160 Pfam Helicase conserved C-terminal domain 963 1079 IPR001650 -
Trre6g02147 1160 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 561 805 IPR027417 -
Trre6g02147 1160 Pfam SNF2-related domain 606 859 IPR000330 GO:0005524|GO:0140658
Trre6g02147 1160 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 626 803 IPR014001 -
Trre6g02147 1160 Gene3D - 882 1160 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02147 Trre-Chr6 18163060 18168256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02147 593 1098 RAD5 or RAD16-like Gene Family AT1G02670 21.640 4.97e-11 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre6g02147 SNF2_N 1.2e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02147 K10875 - egr:104421037 1082.01